Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region
Additional file 1: Figure S1. The bacterial DNA quantification among treatments. Figure S2. Microbial clades showing significant associations with expressions of barrier function related genes in the distal gut. Since the expression levels of barrier function related genes were highly correlated, we...
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ftdatacite:10.6084/m9.figshare.13663320 2023-05-15T15:03:25+02:00 Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild 2021 https://dx.doi.org/10.6084/m9.figshare.13663320 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Microbiota_in_intestinal_digesta_of_Atlantic_salmon_Salmo_salar_observed_from_late_freshwater_stage_until_one_year_in_seawater_and_effects_of_functional_ingredients_a_case_study_from_a_commercial_sized_research_site_in_/13663320 unknown figshare https://dx.doi.org/10.1186/s42523-021-00075-7 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Text article-journal Journal contribution ScholarlyArticle 2021 ftdatacite https://doi.org/10.6084/m9.figshare.13663320 https://doi.org/10.1186/s42523-021-00075-7 2021-11-05T12:55:41Z Additional file 1: Figure S1. The bacterial DNA quantification among treatments. Figure S2. Microbial clades showing significant associations with expressions of barrier function related genes in the distal gut. Since the expression levels of barrier function related genes were highly correlated, we ran a principal component analysis (PCA) and used the first principal component (PC1) for the association testing to avoid multicollinearity and reduce the number of association testing. Except Flavobacterium, 26 differentially abundant taxa showed a clear negative correlation with expression levels of gut barrier function genes, which decreased as PC1 of the PCA increased. FDR, false discovery rate. Figure S3. The experimental conditions of salinity (A), temperature and oxygen (B) in water through the production cycle. Text Arctic Atlantic salmon Salmo salar DataCite Metadata Store (German National Library of Science and Technology) Arctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences |
spellingShingle |
Microbiology FOS Biological sciences Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
topic_facet |
Microbiology FOS Biological sciences |
description |
Additional file 1: Figure S1. The bacterial DNA quantification among treatments. Figure S2. Microbial clades showing significant associations with expressions of barrier function related genes in the distal gut. Since the expression levels of barrier function related genes were highly correlated, we ran a principal component analysis (PCA) and used the first principal component (PC1) for the association testing to avoid multicollinearity and reduce the number of association testing. Except Flavobacterium, 26 differentially abundant taxa showed a clear negative correlation with expression levels of gut barrier function genes, which decreased as PC1 of the PCA increased. FDR, false discovery rate. Figure S3. The experimental conditions of salinity (A), temperature and oxygen (B) in water through the production cycle. |
format |
Text |
author |
Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild |
author_facet |
Wang, Jie Jaramillo-Torres, Alexander Yanxian Li Kortner, Trond M. Gajardo, Karina Brevik, Øyvind Jakobsen Jakobsen, Jan Vidar Krogdahl, Åshild |
author_sort |
Wang, Jie |
title |
Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_short |
Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_full |
Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_fullStr |
Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_full_unstemmed |
Additional file 1 of Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region |
title_sort |
additional file 1 of microbiota in intestinal digesta of atlantic salmon (salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the arctic region |
publisher |
figshare |
publishDate |
2021 |
url |
https://dx.doi.org/10.6084/m9.figshare.13663320 https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Microbiota_in_intestinal_digesta_of_Atlantic_salmon_Salmo_salar_observed_from_late_freshwater_stage_until_one_year_in_seawater_and_effects_of_functional_ingredients_a_case_study_from_a_commercial_sized_research_site_in_/13663320 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Atlantic salmon Salmo salar |
genre_facet |
Arctic Atlantic salmon Salmo salar |
op_relation |
https://dx.doi.org/10.1186/s42523-021-00075-7 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.13663320 https://doi.org/10.1186/s42523-021-00075-7 |
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1766335276444024832 |