R scripts

• Main Author: Barlow, Dawn
• Format: Article in Journal/Newspaper
• Language: unknown
• Published: figshare 2020
• Subjects: Marine Biology; Austral; Blue whale
• Online Access: https://dx.doi.org/10.6084/m9.figshare.13140473.v1; https://figshare.com/articles/software/R_scripts/13140473/1

R scripts for analyses presented in the following manuscript: Fashionably late: Temporal and spatial lags between wind and blue whales in a coastal upwelling system Authors: Dawn R. Barlow 1 *, Holger Klinck 2,3 , Dimitri Ponirakis 2 , Christina Garvey 4 , Leigh G. Torres 1 1 Geospatial Ecology of Marine Megafauna Lab, Marine Mammal Institute, and Department of Fisheries and Wildlife, Oregon State University, Newport, Oregon, USA 2 Center for Conservation Bioacoustics, Cornell University, Ithaca, New York, USA 3 Marine Mammal Institute, Department of Fisheries and Wildlife, Oregon State University, Newport, Oregon, USA 4 University of Maryland, College Park, Maryland, USA *[e-mail] Abstract: Understanding relationships between physical drivers and biological response is central to advancing ecological knowledge. Wind is the physical forcing mechanism in coastal upwelling systems, however lags between wind input and biological responses are seldom quantified for marine predators. Lags were examined between wind at an upwelling source, decreased temperatures along the upwelling plume’s trajectory, and blue whale occurrence in New Zealand’s South Taranaki Bight region (STB). Wind speed and sea surface temperature (SST) were extracted for austral spring-summer months between 2009-2019. A hydrophone recorded blue whale vocalizations October 2016-March 2017. Timeseries cross-correlation analyses were conducted between wind speed, SST at different locations along the upwelling plume, and blue whale D call vocalizations. Results document increasing lag times (0-2 weeks) between wind speed and SST consistent with the spatial progression of upwelling, culminating with increased D call density at the distal end of the plume three weeks after increased wind speeds at the upwelling source. Lag between wind events and blue whale aggregations (n=34 aggregations 2013-2019) was 2.09±0.43 weeks. Variation in lag was significantly related to the amount of wind over the preceding 30 days, which likely influences stratification. This study enhances knowledge of physical-biological coupling in upwelling ecosystems and enables improved forecasting of species distribution patterns for dynamic management.