Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta)
Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes f...
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2020
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ftdatacite:10.6084/m9.figshare.13134725.v1 2023-05-15T16:50:54+02:00 Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) Yesson, Chris Xueni Bian Williamson, Christopher Briscoe, Andrew G Brodie, Juliet 2020 https://dx.doi.org/10.6084/m9.figshare.13134725.v1 https://tandf.figshare.com/articles/dataset/Mitochondrial_and_plastid_genome_variability_of_i_Corallina_officinalis_i_Corallinales_Rhodophyta_/13134725/1 unknown Taylor & Francis https://dx.doi.org/10.1080/26388081.2020.1827940 https://dx.doi.org/10.6084/m9.figshare.13134725 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Microbiology FOS Biological sciences Genetics Biotechnology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Plant Biology 60506 Virology dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.13134725.v1 https://doi.org/10.1080/26388081.2020.1827940 https://doi.org/10.6084/m9.figshare.13134725 2021-11-05T12:55:41Z Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes for Corallina , including C. chilensis and C. ferreyrae . This study reports the first four published plastid genomes for C. officinalis , along with three new mitogenomes from samples in the United Kingdom, Spain and Iceland. The plastid genome is 178 kbp and 99.9% of bases are identical for all samples. The mitogenomes are more variable than the plastid genomes, with lengths varying from 26.2 to 26.7 kbp and 99.0% base identity. Structure and length of both of the genomes are consistent with other published Corallina genomes. The most variable mitochondrial gene is sdh D (3.3% variability), while all plastid genes have <1% base variability, with the most variable being psb 30 (0.95% variability). The stability of the plastid genome means it is not useful for examining intra-specific variability within Corallina . We discuss whether the ratio of mitogenome and plastome sequences recovered in the readpool of NGS sequencing is indicative of relative copy number. Dataset Iceland North Atlantic DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
Microbiology FOS Biological sciences Genetics Biotechnology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Plant Biology 60506 Virology |
spellingShingle |
Microbiology FOS Biological sciences Genetics Biotechnology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Plant Biology 60506 Virology Yesson, Chris Xueni Bian Williamson, Christopher Briscoe, Andrew G Brodie, Juliet Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
topic_facet |
Microbiology FOS Biological sciences Genetics Biotechnology Evolutionary Biology 59999 Environmental Sciences not elsewhere classified FOS Earth and related environmental sciences Ecology 69999 Biological Sciences not elsewhere classified 110309 Infectious Diseases FOS Health sciences Plant Biology 60506 Virology |
description |
Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes for Corallina , including C. chilensis and C. ferreyrae . This study reports the first four published plastid genomes for C. officinalis , along with three new mitogenomes from samples in the United Kingdom, Spain and Iceland. The plastid genome is 178 kbp and 99.9% of bases are identical for all samples. The mitogenomes are more variable than the plastid genomes, with lengths varying from 26.2 to 26.7 kbp and 99.0% base identity. Structure and length of both of the genomes are consistent with other published Corallina genomes. The most variable mitochondrial gene is sdh D (3.3% variability), while all plastid genes have <1% base variability, with the most variable being psb 30 (0.95% variability). The stability of the plastid genome means it is not useful for examining intra-specific variability within Corallina . We discuss whether the ratio of mitogenome and plastome sequences recovered in the readpool of NGS sequencing is indicative of relative copy number. |
format |
Dataset |
author |
Yesson, Chris Xueni Bian Williamson, Christopher Briscoe, Andrew G Brodie, Juliet |
author_facet |
Yesson, Chris Xueni Bian Williamson, Christopher Briscoe, Andrew G Brodie, Juliet |
author_sort |
Yesson, Chris |
title |
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
title_short |
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
title_full |
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
title_fullStr |
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
title_full_unstemmed |
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) |
title_sort |
mitochondrial and plastid genome variability of corallina officinalis (corallinales, rhodophyta) |
publisher |
Taylor & Francis |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.13134725.v1 https://tandf.figshare.com/articles/dataset/Mitochondrial_and_plastid_genome_variability_of_i_Corallina_officinalis_i_Corallinales_Rhodophyta_/13134725/1 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Iceland North Atlantic |
genre_facet |
Iceland North Atlantic |
op_relation |
https://dx.doi.org/10.1080/26388081.2020.1827940 https://dx.doi.org/10.6084/m9.figshare.13134725 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.13134725.v1 https://doi.org/10.1080/26388081.2020.1827940 https://doi.org/10.6084/m9.figshare.13134725 |
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