A crustacean annotated transcriptome (CAT) database
BackgroundDecapods are an order of crustaceans which includes shrimps, crabs, lobsters and crayfish. They occur worldwide and are of great scientific interest as well as being of ecological and economic importance in fisheries and aquaculture. However, our knowledge of their biology mainly comes fro...
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ftdatacite:10.6084/m9.figshare.12924230 2023-05-15T17:54:37+02:00 A crustacean annotated transcriptome (CAT) database Wenyan NONG Zacary Y. H. Chai Xiaosen Jiang Qin, Jing Mak Kai Yan Chow, Billy Kwok Chong Qiu, Jian-Wen Hui, Jerome Ho Lam Ka-Hou Chu 2020 https://dx.doi.org/10.6084/m9.figshare.12924230 https://figshare.com/articles/dataset/A_crustacean_annotated_transcriptome_CAT_database/12924230 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Genetics FOS Biological sciences dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.12924230 2021-11-05T12:55:41Z BackgroundDecapods are an order of crustaceans which includes shrimps, crabs, lobsters and crayfish. They occur worldwide and are of great scientific interest as well as being of ecological and economic importance in fisheries and aquaculture. However, our knowledge of their biology mainly comes from the group which is most closely related to crustaceans – insects. Here we produce a de novo transcriptome database, crustacean annotated transcriptome (CAT) database, spanning multiple tissues and the life stages of seven crustaceans.DescriptionA total of 71 transcriptome assemblies from six decapod species and a stomatopod species, including the coral shrimp Stenopus hispidus , the cherry shrimp Neocaridina davidi , the redclaw crayfish Cherax quadricarinatus , the spiny lobster Panulirus ornatus , the red king crab Paralithodes camtschaticus , the coconut crab Birgus latro , and the zebra mantis shrimp Lysiosquillina maculata , were generated. Differential gene expression analyses within species were generated as a reference and included in a graphical user interface database at http://cat.sls.cuhk.edu.hk/. Users can carry out gene name searches and also access gene sequences based on a sequence query using the BLAST search function.ConclusionsThe data generated and deposited in this database offers a valuable resource for the further study of these crustaceans, as well as being of use in aquaculture development. Dataset Paralithodes camtschaticus Red king crab DataCite Metadata Store (German National Library of Science and Technology) |
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collection |
DataCite Metadata Store (German National Library of Science and Technology) |
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topic |
Genetics FOS Biological sciences |
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Genetics FOS Biological sciences Wenyan NONG Zacary Y. H. Chai Xiaosen Jiang Qin, Jing Mak Kai Yan Chow, Billy Kwok Chong Qiu, Jian-Wen Hui, Jerome Ho Lam Ka-Hou Chu A crustacean annotated transcriptome (CAT) database |
topic_facet |
Genetics FOS Biological sciences |
description |
BackgroundDecapods are an order of crustaceans which includes shrimps, crabs, lobsters and crayfish. They occur worldwide and are of great scientific interest as well as being of ecological and economic importance in fisheries and aquaculture. However, our knowledge of their biology mainly comes from the group which is most closely related to crustaceans – insects. Here we produce a de novo transcriptome database, crustacean annotated transcriptome (CAT) database, spanning multiple tissues and the life stages of seven crustaceans.DescriptionA total of 71 transcriptome assemblies from six decapod species and a stomatopod species, including the coral shrimp Stenopus hispidus , the cherry shrimp Neocaridina davidi , the redclaw crayfish Cherax quadricarinatus , the spiny lobster Panulirus ornatus , the red king crab Paralithodes camtschaticus , the coconut crab Birgus latro , and the zebra mantis shrimp Lysiosquillina maculata , were generated. Differential gene expression analyses within species were generated as a reference and included in a graphical user interface database at http://cat.sls.cuhk.edu.hk/. Users can carry out gene name searches and also access gene sequences based on a sequence query using the BLAST search function.ConclusionsThe data generated and deposited in this database offers a valuable resource for the further study of these crustaceans, as well as being of use in aquaculture development. |
format |
Dataset |
author |
Wenyan NONG Zacary Y. H. Chai Xiaosen Jiang Qin, Jing Mak Kai Yan Chow, Billy Kwok Chong Qiu, Jian-Wen Hui, Jerome Ho Lam Ka-Hou Chu |
author_facet |
Wenyan NONG Zacary Y. H. Chai Xiaosen Jiang Qin, Jing Mak Kai Yan Chow, Billy Kwok Chong Qiu, Jian-Wen Hui, Jerome Ho Lam Ka-Hou Chu |
author_sort |
Wenyan NONG |
title |
A crustacean annotated transcriptome (CAT) database |
title_short |
A crustacean annotated transcriptome (CAT) database |
title_full |
A crustacean annotated transcriptome (CAT) database |
title_fullStr |
A crustacean annotated transcriptome (CAT) database |
title_full_unstemmed |
A crustacean annotated transcriptome (CAT) database |
title_sort |
crustacean annotated transcriptome (cat) database |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.12924230 https://figshare.com/articles/dataset/A_crustacean_annotated_transcriptome_CAT_database/12924230 |
genre |
Paralithodes camtschaticus Red king crab |
genre_facet |
Paralithodes camtschaticus Red king crab |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.12924230 |
_version_ |
1766162415009923072 |