16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes
The study compares the prokaryotic community structure, determined by high-throughput Illumina sequencing of the 16S rRNA genes, found in small (1-53 µm) and large (>53 µm) marine particles collected using oceanographic bottles and in situ pumps. The sampling was performed on board of the R/V Aur...
Main Authors: | , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
figshare
2020
|
Subjects: | |
Online Access: | https://dx.doi.org/10.6084/m9.figshare.12333107.v1 https://figshare.com/articles/16S_sequence_data_from_Puigcorb_et_al_Frontiers_in_Microbiology_article_-_Effect_of_sampling_method_on_particle-attached_prokaryotes/12333107/1 |
id |
ftdatacite:10.6084/m9.figshare.12333107.v1 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.6084/m9.figshare.12333107.v1 2023-05-15T13:48:43+02:00 16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes Viena Puigcorbe Ruiz-González, Clara Gasol, Josep M 2020 https://dx.doi.org/10.6084/m9.figshare.12333107.v1 https://figshare.com/articles/16S_sequence_data_from_Puigcorb_et_al_Frontiers_in_Microbiology_article_-_Effect_of_sampling_method_on_particle-attached_prokaryotes/12333107/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.12333107 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 40501 Biological Oceanography FOS Earth and related environmental sciences 60504 Microbial Ecology FOS Biological sciences dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.12333107.v1 https://doi.org/10.6084/m9.figshare.12333107 2021-11-05T12:55:41Z The study compares the prokaryotic community structure, determined by high-throughput Illumina sequencing of the 16S rRNA genes, found in small (1-53 µm) and large (>53 µm) marine particles collected using oceanographic bottles and in situ pumps. The sampling was performed on board of the R/V Aurora Australis (AA-V02 2016/17) between December 8, 2016 and January 21, 2017, in the Dalton and the Mertz polynyas (East Antarctica; 67.2 - 66.8°S and 119.5-145.8°E). Data collection procedures are described in the paper "Sampling device-dependence of prokaryotic community structure on marine particles: higher diversity recovered by in situ pumps than by oceanographic bottles" by Viena Puigcorbé et al., Frontiers in Microbiology. Here we provide the raw sequence data, together with the non-rarefied OUT table, taxonomy table and environmental data used in this study. The sequences are in the fasta format, they have treated and quality filtered as described in the article. Dataset Antarc* Antarctica aurora australis East Antarctica DataCite Metadata Store (German National Library of Science and Technology) East Antarctica |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
40501 Biological Oceanography FOS Earth and related environmental sciences 60504 Microbial Ecology FOS Biological sciences |
spellingShingle |
40501 Biological Oceanography FOS Earth and related environmental sciences 60504 Microbial Ecology FOS Biological sciences Viena Puigcorbe Ruiz-González, Clara Gasol, Josep M 16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
topic_facet |
40501 Biological Oceanography FOS Earth and related environmental sciences 60504 Microbial Ecology FOS Biological sciences |
description |
The study compares the prokaryotic community structure, determined by high-throughput Illumina sequencing of the 16S rRNA genes, found in small (1-53 µm) and large (>53 µm) marine particles collected using oceanographic bottles and in situ pumps. The sampling was performed on board of the R/V Aurora Australis (AA-V02 2016/17) between December 8, 2016 and January 21, 2017, in the Dalton and the Mertz polynyas (East Antarctica; 67.2 - 66.8°S and 119.5-145.8°E). Data collection procedures are described in the paper "Sampling device-dependence of prokaryotic community structure on marine particles: higher diversity recovered by in situ pumps than by oceanographic bottles" by Viena Puigcorbé et al., Frontiers in Microbiology. Here we provide the raw sequence data, together with the non-rarefied OUT table, taxonomy table and environmental data used in this study. The sequences are in the fasta format, they have treated and quality filtered as described in the article. |
format |
Dataset |
author |
Viena Puigcorbe Ruiz-González, Clara Gasol, Josep M |
author_facet |
Viena Puigcorbe Ruiz-González, Clara Gasol, Josep M |
author_sort |
Viena Puigcorbe |
title |
16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
title_short |
16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
title_full |
16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
title_fullStr |
16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
title_full_unstemmed |
16S sequence data from Puigcorbé et al. Frontiers in Microbiology article - Effect of sampling method on particle-attached prokaryotes |
title_sort |
16s sequence data from puigcorbé et al. frontiers in microbiology article - effect of sampling method on particle-attached prokaryotes |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.12333107.v1 https://figshare.com/articles/16S_sequence_data_from_Puigcorb_et_al_Frontiers_in_Microbiology_article_-_Effect_of_sampling_method_on_particle-attached_prokaryotes/12333107/1 |
geographic |
East Antarctica |
geographic_facet |
East Antarctica |
genre |
Antarc* Antarctica aurora australis East Antarctica |
genre_facet |
Antarc* Antarctica aurora australis East Antarctica |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.12333107 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.12333107.v1 https://doi.org/10.6084/m9.figshare.12333107 |
_version_ |
1766249622616932352 |