Diamond annotation

• Main Author: Celine Noirot
• Format: Dataset
• Language: unknown
• Published: figshare 2020
• Subjects: 60806 Animal Physiological Ecology; FOS Biological sciences; 60102 Bioinformatics; FOS Computer and information sciences; Calanus finmarchicus
• Online Access: https://dx.doi.org/10.6084/m9.figshare.12320735; https://figshare.com/articles/dataset/Diamond_annotation/12320735

p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using DIAMOND 3 . Contigs were aligned with DIAMOND?? 3 on NR (2019-09-29), Swissprot and Trembl (2018-12) to retrieve corresponding best annotations. An annotation matrix was then generated by selecting the best hit for each database if: i) the percent of the query length covered by the alignment was higher than 60% ii) the percent of the subject length covered by the alignment was higher than 40%; iii) the percent of identity of the alignment was higher than 40%. File diamond_annotation_206k.tsv is the annotation list for Calanus finmarchicus reference transcriptome using DIAMOND 3 (36,274 contigs with an annotation in at least one database out of the 206,012). File diamond_annotation_76k.tsv is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using DIAMOND 3 (22,527 contigs with an annotation in at least one database out of the 76,550). 3 DIAMOND: version v0.9.22, parameters: -f 6 qseqid qlen qcovhsp pident score evalue length sseqid slen stitle. Ref: Buchfink, B., Xie, C. & Huson, D. H. Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12, 59–60 (2015). Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886