Interproscan annotation

• Main Author: Celine Noirot
• Format: Dataset
• Language: unknown
• Published: figshare 2020
• Subjects: 60102 Bioinformatics; FOS Computer and information sciences; 60806 Animal Physiological Ecology; FOS Biological sciences; Calanus finmarchicus
• Online Access: https://dx.doi.org/10.6084/m9.figshare.12320729; https://figshare.com/articles/dataset/Interproscan_annotation/12320729

p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO was assigned to each contig with an InterProScan hit containing a GO annotation. Interprot_annot_206K.tsv is the annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 (a GO annotation was attributed to 65,924 contigs out of the 206,012). Interprot_annot_206K.gff3 is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using InterProScan 4 (a GO annotation was attributed to 33,057 contigs out of the 76,550). 4 InterProScan: version 5.29-68.0, --goterms -t n -dp -f TSV, gff3 parameters. Ref: Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236–1240 (2014). Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886