Interproscan annotation
p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO w...
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ftdatacite:10.6084/m9.figshare.12320729.v1 2023-05-15T15:47:53+02:00 Interproscan annotation Celine Noirot 2020 https://dx.doi.org/10.6084/m9.figshare.12320729.v1 https://figshare.com/articles/dataset/Interproscan_annotation/12320729/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.12320729 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 CC0 60102 Bioinformatics FOS Computer and information sciences 60806 Animal Physiological Ecology FOS Biological sciences dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.12320729.v1 https://doi.org/10.6084/m9.figshare.12320729 2021-11-05T12:55:41Z p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO was assigned to each contig with an InterProScan hit containing a GO annotation. Interprot_annot_206K.tsv is the annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 (a GO annotation was attributed to 65,924 contigs out of the 206,012). Interprot_annot_206K.gff3 is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using InterProScan 4 (a GO annotation was attributed to 33,057 contigs out of the 76,550). 4 InterProScan: version 5.29-68.0, --goterms -t n -dp -f TSV, gff3 parameters. Ref: Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236–1240 (2014). Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886 Dataset Calanus finmarchicus DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60102 Bioinformatics FOS Computer and information sciences 60806 Animal Physiological Ecology FOS Biological sciences |
spellingShingle |
60102 Bioinformatics FOS Computer and information sciences 60806 Animal Physiological Ecology FOS Biological sciences Celine Noirot Interproscan annotation |
topic_facet |
60102 Bioinformatics FOS Computer and information sciences 60806 Animal Physiological Ecology FOS Biological sciences |
description |
p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO was assigned to each contig with an InterProScan hit containing a GO annotation. Interprot_annot_206K.tsv is the annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 (a GO annotation was attributed to 65,924 contigs out of the 206,012). Interprot_annot_206K.gff3 is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using InterProScan 4 (a GO annotation was attributed to 33,057 contigs out of the 76,550). 4 InterProScan: version 5.29-68.0, --goterms -t n -dp -f TSV, gff3 parameters. Ref: Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236–1240 (2014). Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886 |
format |
Dataset |
author |
Celine Noirot |
author_facet |
Celine Noirot |
author_sort |
Celine Noirot |
title |
Interproscan annotation |
title_short |
Interproscan annotation |
title_full |
Interproscan annotation |
title_fullStr |
Interproscan annotation |
title_full_unstemmed |
Interproscan annotation |
title_sort |
interproscan annotation |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.12320729.v1 https://figshare.com/articles/dataset/Interproscan_annotation/12320729/1 |
genre |
Calanus finmarchicus |
genre_facet |
Calanus finmarchicus |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.12320729 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.6084/m9.figshare.12320729.v1 https://doi.org/10.6084/m9.figshare.12320729 |
_version_ |
1766382855159545856 |