Interproscan annotation
p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO w...
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Format: | Dataset |
Language: | unknown |
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figshare
2020
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.12320729.v1 https://figshare.com/articles/dataset/Interproscan_annotation/12320729/1 |
Summary: | p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 . Contigs were processed with InterProScan 4 to scan InterProScan signatures. A GO was assigned to each contig with an InterProScan hit containing a GO annotation. Interprot_annot_206K.tsv is the annotation list for Calanus finmarchicus reference transcriptome using InterProScan 4 (a GO annotation was attributed to 65,924 contigs out of the 206,012). Interprot_annot_206K.gff3 is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using InterProScan 4 (a GO annotation was attributed to 33,057 contigs out of the 76,550). 4 InterProScan: version 5.29-68.0, --goterms -t n -dp -f TSV, gff3 parameters. Ref: Jones, P. et al. InterProScan 5: genome-scale protein function classification. Bioinformatics 30, 1236–1240 (2014). Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886 |
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