aclim_00_JunV2_2019_2.zip
Multispecies Assessment model runs for the Eastern Bering Sea (run with trophic interactions). More information available at:www.fisheries.noaa.gov/resource/data/2018-climate-enhanced-multi-species-stock-assessment-walleye-pollock-pacific-cod-and Three files included to support Rcode forHolsman et a...
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Online Access: | https://dx.doi.org/10.6084/m9.figshare.11864571.v2 https://figshare.com/articles/aclim_00_JunV2_2019_2_zipEBM_Holsman_Bering_Sea_climate_change_files/11864571/2 |
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ftdatacite:10.6084/m9.figshare.11864571.v2 2023-05-15T15:43:56+02:00 aclim_00_JunV2_2019_2.zip Holsman, Kirstin 2020 https://dx.doi.org/10.6084/m9.figshare.11864571.v2 https://figshare.com/articles/aclim_00_JunV2_2019_2_zipEBM_Holsman_Bering_Sea_climate_change_files/11864571/2 unknown figshare https://dx.doi.org/10.6084/m9.figshare.11864571 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60205 Marine and Estuarine Ecology incl. Marine Ichthyology FOS Biological sciences 40104 Climate Change Processes FOS Earth and related environmental sciences 70403 Fisheries Management FOS Agriculture, forestry and fisheries dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.11864571.v2 https://doi.org/10.6084/m9.figshare.11864571 2021-11-05T12:55:41Z Multispecies Assessment model runs for the Eastern Bering Sea (run with trophic interactions). More information available at:www.fisheries.noaa.gov/resource/data/2018-climate-enhanced-multi-species-stock-assessment-walleye-pollock-pacific-cod-and Three files included to support Rcode forHolsman et al. Ecosystem-based fisheries management forestalls climate-driven collapse. Nature Climate Change (in review). Code available at: https://github.com/kholsman/EBM_Holsman_NatComm ## Input data:If running plotting code below (recommended) you will need to download the intermediate data "EBM_ceattlenew.Rdata" from figshare and place it in the main directory: "EBM_Holsman_NatComm/EBM_ceattlenew.Rdata". If re-running the intermediate data analysis (not recommended) the following files will need to be downloaded unzipped and placed in the asssesment_files folder:EBM_Holsman_NatComm/data/runs/[ files] ## Intermediate data:Intermediate data can be found in the main EBM_Holsman_NatComm in the form of .Rdata files but can be recreated from the ADMB model using the EBM_Holsman_NatComm/assessment_scripts/README_EBM_Holsman_Analysis.pdf (not recommended; see below). ## Figures and tables:Final figures and tables (including illustrator files that were used to add fish icons) can be found in the **Figures** folder. This is the main script for running analysis and plotting results and requires R version 3.5.3 (available at https://cran.r-project.org/bin/macosx/el-capitan/base/). To update the analysis using .Rdata outputs run the R() code below as is currently configured. If you want to update the intermediate data, set "readdat" to TRUE in line 80 below. The CEATTLE stock assessment is also included but requires AD Model builder (http://www.admb-project.org). To run the assessment scripts (not recommended or tested outside of macOSX) see "README_EBM_Holsman_Analysis.pdf". Dataset Bering Sea DataCite Metadata Store (German National Library of Science and Technology) Bering Sea Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60205 Marine and Estuarine Ecology incl. Marine Ichthyology FOS Biological sciences 40104 Climate Change Processes FOS Earth and related environmental sciences 70403 Fisheries Management FOS Agriculture, forestry and fisheries |
spellingShingle |
60205 Marine and Estuarine Ecology incl. Marine Ichthyology FOS Biological sciences 40104 Climate Change Processes FOS Earth and related environmental sciences 70403 Fisheries Management FOS Agriculture, forestry and fisheries Holsman, Kirstin aclim_00_JunV2_2019_2.zip |
topic_facet |
60205 Marine and Estuarine Ecology incl. Marine Ichthyology FOS Biological sciences 40104 Climate Change Processes FOS Earth and related environmental sciences 70403 Fisheries Management FOS Agriculture, forestry and fisheries |
description |
Multispecies Assessment model runs for the Eastern Bering Sea (run with trophic interactions). More information available at:www.fisheries.noaa.gov/resource/data/2018-climate-enhanced-multi-species-stock-assessment-walleye-pollock-pacific-cod-and Three files included to support Rcode forHolsman et al. Ecosystem-based fisheries management forestalls climate-driven collapse. Nature Climate Change (in review). Code available at: https://github.com/kholsman/EBM_Holsman_NatComm ## Input data:If running plotting code below (recommended) you will need to download the intermediate data "EBM_ceattlenew.Rdata" from figshare and place it in the main directory: "EBM_Holsman_NatComm/EBM_ceattlenew.Rdata". If re-running the intermediate data analysis (not recommended) the following files will need to be downloaded unzipped and placed in the asssesment_files folder:EBM_Holsman_NatComm/data/runs/[ files] ## Intermediate data:Intermediate data can be found in the main EBM_Holsman_NatComm in the form of .Rdata files but can be recreated from the ADMB model using the EBM_Holsman_NatComm/assessment_scripts/README_EBM_Holsman_Analysis.pdf (not recommended; see below). ## Figures and tables:Final figures and tables (including illustrator files that were used to add fish icons) can be found in the **Figures** folder. This is the main script for running analysis and plotting results and requires R version 3.5.3 (available at https://cran.r-project.org/bin/macosx/el-capitan/base/). To update the analysis using .Rdata outputs run the R() code below as is currently configured. If you want to update the intermediate data, set "readdat" to TRUE in line 80 below. The CEATTLE stock assessment is also included but requires AD Model builder (http://www.admb-project.org). To run the assessment scripts (not recommended or tested outside of macOSX) see "README_EBM_Holsman_Analysis.pdf". |
format |
Dataset |
author |
Holsman, Kirstin |
author_facet |
Holsman, Kirstin |
author_sort |
Holsman, Kirstin |
title |
aclim_00_JunV2_2019_2.zip |
title_short |
aclim_00_JunV2_2019_2.zip |
title_full |
aclim_00_JunV2_2019_2.zip |
title_fullStr |
aclim_00_JunV2_2019_2.zip |
title_full_unstemmed |
aclim_00_JunV2_2019_2.zip |
title_sort |
aclim_00_junv2_2019_2.zip |
publisher |
figshare |
publishDate |
2020 |
url |
https://dx.doi.org/10.6084/m9.figshare.11864571.v2 https://figshare.com/articles/aclim_00_JunV2_2019_2_zipEBM_Holsman_Bering_Sea_climate_change_files/11864571/2 |
geographic |
Bering Sea Pacific |
geographic_facet |
Bering Sea Pacific |
genre |
Bering Sea |
genre_facet |
Bering Sea |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.11864571 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.11864571.v2 https://doi.org/10.6084/m9.figshare.11864571 |
_version_ |
1766378154257022976 |