Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues)

• Main Authors: Olson, Claire, Roberts, Steven
• Format: Dataset
• Language: unknown
• Published: figshare 2014
• Subjects: 60102 Bioinformatics; FOS Computer and information sciences; Marine Biology; Developmental Biology; Physiology; FOS Biological sciences; Molecular Biology; Genetics; Pacific; Crassostrea gigas; Pacific oyster
• Online Access: https://dx.doi.org/10.6084/m9.figshare.1060465; https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_larvae_and_sperm_tissues_/1060465

This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Ensembl). File descriptions: methratio_out_CG5x_IGV_M1.igv - Male 1 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_M3.igv - Male 3 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D3.igv - Larvae from male 1 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D5.igv - Larvae from male 1 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D3.igv - Larvae from male 3 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D5.igv - Larvae from male 3 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. LarvaeSperm_igv.xml - A session file, which loads sample methylation tracks and location of C.gigas genome features.