Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues)
This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Featu...
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ftdatacite:10.6084/m9.figshare.1060465.v1 2023-05-15T15:58:10+02:00 Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) Olson, Claire Roberts, Steven 2014 https://dx.doi.org/10.6084/m9.figshare.1060465.v1 https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_larvae_and_sperm_tissues_/1060465/1 unknown figshare https://dx.doi.org/10.6084/m9.figshare.1060465 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY 60102 Bioinformatics FOS Computer and information sciences Marine Biology Developmental Biology Physiology FOS Biological sciences Molecular Biology Genetics dataset Dataset 2014 ftdatacite https://doi.org/10.6084/m9.figshare.1060465.v1 https://doi.org/10.6084/m9.figshare.1060465 2021-11-05T12:55:41Z This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Ensembl). File descriptions: methratio_out_CG5x_IGV_M1.igv - Male 1 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_M3.igv - Male 3 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D3.igv - Larvae from male 1 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D5.igv - Larvae from male 1 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D3.igv - Larvae from male 3 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D5.igv - Larvae from male 3 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. LarvaeSperm_igv.xml - A session file, which loads sample methylation tracks and location of C.gigas genome features. Dataset Crassostrea gigas Pacific oyster DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
60102 Bioinformatics FOS Computer and information sciences Marine Biology Developmental Biology Physiology FOS Biological sciences Molecular Biology Genetics |
spellingShingle |
60102 Bioinformatics FOS Computer and information sciences Marine Biology Developmental Biology Physiology FOS Biological sciences Molecular Biology Genetics Olson, Claire Roberts, Steven Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
topic_facet |
60102 Bioinformatics FOS Computer and information sciences Marine Biology Developmental Biology Physiology FOS Biological sciences Molecular Biology Genetics |
description |
This fileset contains genomic feature tracks from high-throughput bisulfite sequencing for Pacific oyster (Crassostrea gigas) spermatozoa and larvae samples. Samples were taken from two males (Male 1 and Male 3) and larvae taken from these males at Day 3 (D3) and Day 5 (D5) post-fertilization. Feature tracks were developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/) in conjunction with the C. gigas genome (Ensembl). File descriptions: methratio_out_CG5x_IGV_M1.igv - Male 1 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_M3.igv - Male 3 location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D3.igv - Larvae from male 1 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T1D5.igv - Larvae from male 1 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D3.igv - Larvae from male 3 day 3 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. methratio_out_CG5x_IGV_T3D5.igv - Larvae from male 3 day 5 post-fertilization location and proportion of methylation for all analyzed CpG dinucleotides with greater than 5x coverage. LarvaeSperm_igv.xml - A session file, which loads sample methylation tracks and location of C.gigas genome features. |
format |
Dataset |
author |
Olson, Claire Roberts, Steven |
author_facet |
Olson, Claire Roberts, Steven |
author_sort |
Olson, Claire |
title |
Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
title_short |
Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
title_full |
Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
title_fullStr |
Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
title_full_unstemmed |
Crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
title_sort |
crassostrea gigas high-throughput bisulfite sequencing (larvae and sperm tissues) |
publisher |
figshare |
publishDate |
2014 |
url |
https://dx.doi.org/10.6084/m9.figshare.1060465.v1 https://figshare.com/articles/dataset/Crassostrea_gigas_high_throughput_bisulfite_sequencing_larvae_and_sperm_tissues_/1060465/1 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_relation |
https://dx.doi.org/10.6084/m9.figshare.1060465 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.6084/m9.figshare.1060465.v1 https://doi.org/10.6084/m9.figshare.1060465 |
_version_ |
1766393905056579584 |