A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.

File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) an...

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Main Authors: Graceline Tina Kirubakaran, Kent, Matthew Peter
Format: Dataset
Language:unknown
Published: figshare 2020
Subjects:
Molecular Biology
atlantic cod
Online Access:https://dx.doi.org/10.6084/m9.figshare.10252919
https://figshare.com/articles/A_nanopore_based_chromosome-level_assembly_representing_Atlantic_cod_from_the_Celtic_Sea_/10252919
id ftdatacite:10.6084/m9.figshare.10252919
record_format openpolar
spelling ftdatacite:10.6084/m9.figshare.10252919 2023-05-15T15:27:26+02:00 A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea. Graceline Tina Kirubakaran Kent, Matthew Peter 2020 https://dx.doi.org/10.6084/m9.figshare.10252919 https://figshare.com/articles/A_nanopore_based_chromosome-level_assembly_representing_Atlantic_cod_from_the_Celtic_Sea_/10252919 unknown figshare Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Molecular Biology dataset Dataset 2020 ftdatacite https://doi.org/10.6084/m9.figshare.10252919 2021-11-05T12:55:41Z File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC). Table S2: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases. Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes. Table S3: This contains the list of genes in LGs 1, 2, 7 and 12. File S2: The putative 258bp centromere repeat sequence.gadMor_celtic_repeat_Library.fa.txt - Repeat library gadMor_Celtic.fa.txt -Genome assembly Dataset atlantic cod DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Molecular Biology
spellingShingle Molecular Biology
Graceline Tina Kirubakaran
Kent, Matthew Peter
A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
topic_facet Molecular Biology
description File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC). Table S2: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases. Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes. Table S3: This contains the list of genes in LGs 1, 2, 7 and 12. File S2: The putative 258bp centromere repeat sequence.gadMor_celtic_repeat_Library.fa.txt - Repeat library gadMor_Celtic.fa.txt -Genome assembly
format Dataset
author Graceline Tina Kirubakaran
Kent, Matthew Peter
author_facet Graceline Tina Kirubakaran
Kent, Matthew Peter
author_sort Graceline Tina Kirubakaran
title A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
title_short A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
title_full A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
title_fullStr A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
title_full_unstemmed A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
title_sort nanopore based chromosome-level assembly representing atlantic cod from the celtic sea.
publisher figshare
publishDate 2020
url https://dx.doi.org/10.6084/m9.figshare.10252919
https://figshare.com/articles/A_nanopore_based_chromosome-level_assembly_representing_Atlantic_cod_from_the_Celtic_Sea_/10252919
genre atlantic cod
genre_facet atlantic cod
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.10252919
_version_ 1766357877361999872

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