Genomic data from Chinstrap penguin ( Pygoscelis antarctica ).
The Chinstrap penguin inhabits a variety of islands and shores in the Southern Pacific and the Antarctic Oceans. It has a narrow black band under its head. They breed in Antarctica, Argentina, Bouvet Island, Chile, the Falkland Islands, the French Southern Territories, and South Georgia and the Sout...
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Format: | Dataset |
Language: | English |
Published: |
GigaScience Database
2019
|
Subjects: | |
Online Access: | https://dx.doi.org/10.5524/102181 http://gigadb.org/dataset/102181 |
id |
ftdatacite:10.5524/102181 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.5524/102181 2023-05-15T14:05:20+02:00 Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang 2019 https://dx.doi.org/10.5524/102181 http://gigadb.org/dataset/102181 en eng GigaScience Database https://dx.doi.org/100649 CC0 1.0 Universal http://creativecommons.org/publicdomain/zero/1.0 CC0 Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution dataset Dataset GigaDB Dataset 2019 ftdatacite https://doi.org/10.5524/102181 https://doi.org/100649 2021-11-05T12:55:41Z The Chinstrap penguin inhabits a variety of islands and shores in the Southern Pacific and the Antarctic Oceans. It has a narrow black band under its head. They breed in Antarctica, Argentina, Bouvet Island, Chile, the Falkland Islands, the French Southern Territories, and South Georgia and the South Sandwich Islands. Populations of Chinstrap penguin are considered to be decreasing overall, however in many sites the populations are increasing or stable. They are considered as Least Concern by the International Union for Conservation of Nature (IUCN). We sequenced the genome of an adult Chinstrap penguin from Thule Island, South Sandwich Islands (provided by Tom Hart) to a depth of approximately 125x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.24Gb, with the contig and scaffold N50 values of 115.56Kb and 5.89Mb respectively. We identified 15488 protein-coding genes. Dataset Antarc* Antarctic Antarctica Bouvet Island Chinstrap penguin Pygoscelis antarctica South Sandwich Islands Thule Island DataCite Metadata Store (German National Library of Science and Technology) Antarctic The Antarctic Sandwich Islands South Sandwich Islands Pacific Argentina South Georgia ENVELOPE(-33.000,-33.000,-56.000,-56.000) Bouvet ENVELOPE(3.358,3.358,-54.422,-54.422) Bouvet Island ENVELOPE(3.358,3.358,-54.422,-54.422) Thule Island ENVELOPE(-27.317,-27.317,-59.450,-59.450) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution |
spellingShingle |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
topic_facet |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution |
description |
The Chinstrap penguin inhabits a variety of islands and shores in the Southern Pacific and the Antarctic Oceans. It has a narrow black band under its head. They breed in Antarctica, Argentina, Bouvet Island, Chile, the Falkland Islands, the French Southern Territories, and South Georgia and the South Sandwich Islands. Populations of Chinstrap penguin are considered to be decreasing overall, however in many sites the populations are increasing or stable. They are considered as Least Concern by the International Union for Conservation of Nature (IUCN). We sequenced the genome of an adult Chinstrap penguin from Thule Island, South Sandwich Islands (provided by Tom Hart) to a depth of approximately 125x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.24Gb, with the contig and scaffold N50 values of 115.56Kb and 5.89Mb respectively. We identified 15488 protein-coding genes. |
format |
Dataset |
author |
Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang |
author_facet |
Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang |
author_sort |
Alan, D Tennyson J |
title |
Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
title_short |
Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
title_full |
Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
title_fullStr |
Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
title_full_unstemmed |
Genomic data from Chinstrap penguin ( Pygoscelis antarctica ). |
title_sort |
genomic data from chinstrap penguin ( pygoscelis antarctica ). |
publisher |
GigaScience Database |
publishDate |
2019 |
url |
https://dx.doi.org/10.5524/102181 http://gigadb.org/dataset/102181 |
long_lat |
ENVELOPE(-33.000,-33.000,-56.000,-56.000) ENVELOPE(3.358,3.358,-54.422,-54.422) ENVELOPE(3.358,3.358,-54.422,-54.422) ENVELOPE(-27.317,-27.317,-59.450,-59.450) |
geographic |
Antarctic The Antarctic Sandwich Islands South Sandwich Islands Pacific Argentina South Georgia Bouvet Bouvet Island Thule Island |
geographic_facet |
Antarctic The Antarctic Sandwich Islands South Sandwich Islands Pacific Argentina South Georgia Bouvet Bouvet Island Thule Island |
genre |
Antarc* Antarctic Antarctica Bouvet Island Chinstrap penguin Pygoscelis antarctica South Sandwich Islands Thule Island |
genre_facet |
Antarc* Antarctic Antarctica Bouvet Island Chinstrap penguin Pygoscelis antarctica South Sandwich Islands Thule Island |
op_relation |
https://dx.doi.org/100649 |
op_rights |
CC0 1.0 Universal http://creativecommons.org/publicdomain/zero/1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.5524/102181 https://doi.org/100649 |
_version_ |
1766277161328574464 |