Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ).
The Eastern rockhopper penguin is a small crested penguin. It is closely related to the Western rockhopper penguin, however there is still some debate about whether both are considered incipient species, sub-species or distinct species. Recent genetic work suggests they are probably separate species...
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2019
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Online Access: | https://dx.doi.org/10.5524/102169 http://gigadb.org/dataset/102169 |
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ftdatacite:10.5524/102169 2023-05-15T14:05:20+02:00 Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang 2019 https://dx.doi.org/10.5524/102169 http://gigadb.org/dataset/102169 en eng GigaScience Database https://dx.doi.org/100649 CC0 1.0 Universal http://creativecommons.org/publicdomain/zero/1.0 CC0 Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution dataset Dataset GigaDB Dataset 2019 ftdatacite https://doi.org/10.5524/102169 https://doi.org/100649 2021-11-05T12:55:41Z The Eastern rockhopper penguin is a small crested penguin. It is closely related to the Western rockhopper penguin, however there is still some debate about whether both are considered incipient species, sub-species or distinct species. Recent genetic work suggests they are probably separate species. The Eastern rockhopper penguin breeds widely on subantarctic islands from New Zealand Campbell/Auckland/Antipodes Islands to the Prince Edward Islands group. The International Union for Conservation of Nature (IUCN) classifies the Southern rockhopper penguin group (including both the Eastern and the Western rockhopper penguin) as vulnerable. We sequenced the genome of an adult Eastern rockhopper penguin from Possession Island, Crozet Islands (provided by Yves Cherel) to a depth of approximately 163x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.25Gb, with the contig and scaffold N50 values of 72.54Kb and 6.13Mb respectively. We identified 15963 protein-coding genes. Dataset Antarc* Antarctica Antipodes Islands Crozet Islands Possession Island Prince Edward Islands Rockhopper penguin DataCite Metadata Store (German National Library of Science and Technology) New Zealand Possession Island ENVELOPE(171.200,171.200,-71.867,-71.867) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution |
spellingShingle |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
topic_facet |
Genomic genomics sphenisciformes comparative evolution phylogenetics speciation biogeography demography climate change antarctica evolution |
description |
The Eastern rockhopper penguin is a small crested penguin. It is closely related to the Western rockhopper penguin, however there is still some debate about whether both are considered incipient species, sub-species or distinct species. Recent genetic work suggests they are probably separate species. The Eastern rockhopper penguin breeds widely on subantarctic islands from New Zealand Campbell/Auckland/Antipodes Islands to the Prince Edward Islands group. The International Union for Conservation of Nature (IUCN) classifies the Southern rockhopper penguin group (including both the Eastern and the Western rockhopper penguin) as vulnerable. We sequenced the genome of an adult Eastern rockhopper penguin from Possession Island, Crozet Islands (provided by Yves Cherel) to a depth of approximately 163x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.25Gb, with the contig and scaffold N50 values of 72.54Kb and 6.13Mb respectively. We identified 15963 protein-coding genes. |
format |
Dataset |
author |
Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang |
author_facet |
Alan, D Tennyson J Andrew, Reeve Hart McKinlay Bruce Charles-André, Bost Chengran, Zhou Daniel, Ksepka T Thompson R David David, Houston M De, Zhang Xing Emily, Kay Miller Gary George, Pacheco Guojie, Zhang Hailin, Pan Helen, Taylor Bouzat L Juan Juan, Masello F Kathryn, Johnson Kim, Labuschagne Lara, Shepherd D Lisa, Nupen J Argilla S Lisa Mads, Bertelsen F Ellegaard R Martin Melanie, Young J Miaoquan, Fang Mikkel-Holger, Sinding S M.Thomas, Gilbert P Boersma Dee P Pablo, García Borboroglu Patricia, Parker Pauline, Howard Dann Peter Peter, Ryan G Petra, Quillfeldt Phillips A Richard Grosser Stefanie Steven, Fiddaman R Theresa, Cole Thomas, Mattern Stracke Thomas Tom, Hart Ursula, Ellenberg Xupeng, Bi Yves, Cherel Zhengtao, Yang |
author_sort |
Alan, D Tennyson J |
title |
Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
title_short |
Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
title_full |
Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
title_fullStr |
Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
title_full_unstemmed |
Genomic data from Eastern rockhopper penguin ( Eudyptes filholi ). |
title_sort |
genomic data from eastern rockhopper penguin ( eudyptes filholi ). |
publisher |
GigaScience Database |
publishDate |
2019 |
url |
https://dx.doi.org/10.5524/102169 http://gigadb.org/dataset/102169 |
long_lat |
ENVELOPE(171.200,171.200,-71.867,-71.867) |
geographic |
New Zealand Possession Island |
geographic_facet |
New Zealand Possession Island |
genre |
Antarc* Antarctica Antipodes Islands Crozet Islands Possession Island Prince Edward Islands Rockhopper penguin |
genre_facet |
Antarc* Antarctica Antipodes Islands Crozet Islands Possession Island Prince Edward Islands Rockhopper penguin |
op_relation |
https://dx.doi.org/100649 |
op_rights |
CC0 1.0 Universal http://creativecommons.org/publicdomain/zero/1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.5524/102169 https://doi.org/100649 |
_version_ |
1766277158995492864 |