16S V4-V4 taxonomy classifier ...

16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs...

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Bibliographic Details
Main Authors: Anderson, Sean, Silliman, Katherine, Thompson, Luke
Format: Dataset
Language:unknown
Published: Zenodo 2023
Subjects:
metabarcoding
reference database
16S rRNA
naive-bayes classifier
Ocean acidification
Online Access:https://dx.doi.org/10.5281/zenodo.8392695
https://zenodo.org/record/8392695
id ftdatacite:10.5281/zenodo.8392695
record_format openpolar
spelling ftdatacite:10.5281/zenodo.8392695 2023-11-05T03:44:27+01:00 16S V4-V4 taxonomy classifier ... Anderson, Sean Silliman, Katherine Thompson, Luke 2023 https://dx.doi.org/10.5281/zenodo.8392695 https://zenodo.org/record/8392695 unknown Zenodo https://dx.doi.org/10.5281/zenodo.8392694 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess metabarcoding reference database 16S rRNA naive-bayes classifier Dataset dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.839269510.5281/zenodo.8392694 2023-10-09T11:10:29Z 16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic metabarcoding
reference database
16S rRNA
naive-bayes classifier
spellingShingle metabarcoding
reference database
16S rRNA
naive-bayes classifier
Anderson, Sean
Silliman, Katherine
Thompson, Luke
16S V4-V4 taxonomy classifier ...
topic_facet metabarcoding
reference database
16S rRNA
naive-bayes classifier
description 16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ...
format Dataset
author Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_facet Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_sort Anderson, Sean
title 16S V4-V4 taxonomy classifier ...
title_short 16S V4-V4 taxonomy classifier ...
title_full 16S V4-V4 taxonomy classifier ...
title_fullStr 16S V4-V4 taxonomy classifier ...
title_full_unstemmed 16S V4-V4 taxonomy classifier ...
title_sort 16s v4-v4 taxonomy classifier ...
publisher Zenodo
publishDate 2023
url https://dx.doi.org/10.5281/zenodo.8392695
https://zenodo.org/record/8392695
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://dx.doi.org/10.5281/zenodo.8392694
op_rights Open Access
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.5281/zenodo.839269510.5281/zenodo.8392694
_version_ 1781704354754985984

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