16S V4-V4 taxonomy classifier ...
16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs...
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Online Access: | https://dx.doi.org/10.5281/zenodo.8392694 https://zenodo.org/record/8392694 |
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ftdatacite:10.5281/zenodo.8392694 2023-11-05T03:44:27+01:00 16S V4-V4 taxonomy classifier ... Anderson, Sean Silliman, Katherine Thompson, Luke 2023 https://dx.doi.org/10.5281/zenodo.8392694 https://zenodo.org/record/8392694 unknown Zenodo https://dx.doi.org/10.5281/zenodo.8392695 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess metabarcoding reference database 16S rRNA naive-bayes classifier Dataset dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.839269410.5281/zenodo.8392695 2023-10-09T11:10:29Z 16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
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unknown |
topic |
metabarcoding reference database 16S rRNA naive-bayes classifier |
spellingShingle |
metabarcoding reference database 16S rRNA naive-bayes classifier Anderson, Sean Silliman, Katherine Thompson, Luke 16S V4-V4 taxonomy classifier ... |
topic_facet |
metabarcoding reference database 16S rRNA naive-bayes classifier |
description |
16S metabarcoding databases and naive-bayes classifier specific to the V4-V5 region. Built from the Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f: GTGYCAGCMGCCGCGGTAA EMP 16S 926r: CCGYCAATTYMTTTRAGTTT File description File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 ... : "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." ... |
format |
Dataset |
author |
Anderson, Sean Silliman, Katherine Thompson, Luke |
author_facet |
Anderson, Sean Silliman, Katherine Thompson, Luke |
author_sort |
Anderson, Sean |
title |
16S V4-V4 taxonomy classifier ... |
title_short |
16S V4-V4 taxonomy classifier ... |
title_full |
16S V4-V4 taxonomy classifier ... |
title_fullStr |
16S V4-V4 taxonomy classifier ... |
title_full_unstemmed |
16S V4-V4 taxonomy classifier ... |
title_sort |
16s v4-v4 taxonomy classifier ... |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://dx.doi.org/10.5281/zenodo.8392694 https://zenodo.org/record/8392694 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://dx.doi.org/10.5281/zenodo.8392695 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.839269410.5281/zenodo.8392695 |
_version_ |
1781704355172319232 |