Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ...
Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/Al...
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Online Access: | https://dx.doi.org/10.5281/zenodo.8287779 https://zenodo.org/record/8287779 |
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ftdatacite:10.5281/zenodo.8287779 2023-10-01T03:57:50+02:00 Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... Cohen, Natalie Krinos, Arianna Alexander, Harriet Saito, Mak 2022 https://dx.doi.org/10.5281/zenodo.8287779 https://zenodo.org/record/8287779 en eng Zenodo https://dx.doi.org/10.5281/zenodo.7317271 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess metatranscriptome, protists, ocean, microbes Dataset dataset 2022 ftdatacite https://doi.org/10.5281/zenodo.828777910.5281/zenodo.7317271 2023-09-04T15:12:45Z Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/AlexanderLabWHOI/eukrhythmic merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon ... Dataset North Atlantic DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
metatranscriptome, protists, ocean, microbes |
spellingShingle |
metatranscriptome, protists, ocean, microbes Cohen, Natalie Krinos, Arianna Alexander, Harriet Saito, Mak Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
topic_facet |
metatranscriptome, protists, ocean, microbes |
description |
Metatranscriptomic assembly, predicted open reading frames, counts, and annotation files from seawater samples obtained in the western North Atlantic Ocean. GitHub notebooks are located here: https://github.com/cnatalie/BATS. Assembly was created using the eukrhythmic pipeline: https://github.com/AlexanderLabWHOI/eukrhythmic merged_merged.fasta.gz = Final assembly, merged across 44 metatranscriptomes using 4 different assemblers merged.fasta.transdecoder.pep.zip = Open reading frames of final assembly, predicted by Transdecoder merged.fasta.transdecoder-estimated-taxonomy.out.zip = EUKulele-derived taxonomic annotations of ORFs using a combined EukProt, PhyloDB, and RefSeq reference database newtaxa.eukprot.merged.fasta.transdecoder-estimated-taxonomy.out.zip = similar to above, but manually curated mid-level taxonomy for supergroups of interest eggnog.emapper.annotations.zip = eggnog-mapper annotations of ORFs table.tab.zip = counts associated with ORFs (merged.fasta.transdecoder.pep) generated with Salmon ... |
format |
Dataset |
author |
Cohen, Natalie Krinos, Arianna Alexander, Harriet Saito, Mak |
author_facet |
Cohen, Natalie Krinos, Arianna Alexander, Harriet Saito, Mak |
author_sort |
Cohen, Natalie |
title |
Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
title_short |
Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
title_full |
Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
title_fullStr |
Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
title_full_unstemmed |
Protistan metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling ... |
title_sort |
protistan metabolism across the western north atlantic ocean revealed through autonomous underwater profiling ... |
publisher |
Zenodo |
publishDate |
2022 |
url |
https://dx.doi.org/10.5281/zenodo.8287779 https://zenodo.org/record/8287779 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_relation |
https://dx.doi.org/10.5281/zenodo.7317271 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.828777910.5281/zenodo.7317271 |
_version_ |
1778529917013590016 |