hdr-bgnn/Morphology-analysis: Version 1.0.0 ...

Release created to populate Zenodo. This code base produces a presence-absence table (default), create landmarks (optional), visualization of landmarks (optional), and extracts measurements (optional) from a segmented fish image (see BGNN-trait-segmentation). Secondarily, this repository provides a...

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Bibliographic Details
Main Authors: Tabarin, Thibault, Bradley, John, Balk, Meghan, Lapp, Hilmar
Format: Software
Language:unknown
Published: Zenodo 2023
Subjects:
Minnows
The Minnows
Online Access:https://dx.doi.org/10.5281/zenodo.7987697
https://zenodo.org/record/7987697
Description
Summary:Release created to populate Zenodo. This code base produces a presence-absence table (default), create landmarks (optional), visualization of landmarks (optional), and extracts measurements (optional) from a segmented fish image (see BGNN-trait-segmentation). Secondarily, this repository provides a framework for creating modularized tools by using classes. A Docker container image of this codebase and its dependencies is automatically built and published each time a new release is published. The Docker container isolates dependencies and facilitates reproducible and version-tagged integration into Imageomics workflows (see for example the BGNN Core Workflow). This tool was originally developed for the Minnows Project. ...

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