rCRUX Generated Ford Fish 16S Reference Database ...
rCRUX generated reference database using NCBI nt blast database downloaded in December 2022. Primer Name: Ford Fish 16S Gene: 16S Length of Target: 330 get_seeds_local() minimum length: 279 get_seeds_local() maximum length: 477 blast_seeds() minimum length: 231 blast_seeds() maximum length: 429 max_...
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Online Access: | https://dx.doi.org/10.5281/zenodo.7909643 https://zenodo.org/record/7909643 |
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ftdatacite:10.5281/zenodo.7909643 2023-12-03T10:25:22+01:00 rCRUX Generated Ford Fish 16S Reference Database ... Gold, Zachary Curd, Emily Gal, Luna Gallego, Ramon Nielsen, Shaun 2023 https://dx.doi.org/10.5281/zenodo.7909643 https://zenodo.org/record/7909643 unknown Zenodo https://dx.doi.org/10.5281/zenodo.7909642 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess Metabarcoding eDNA Fish rCRUX Reference barcode database dataset Dataset 2023 ftdatacite https://doi.org/10.5281/zenodo.790964310.5281/zenodo.7909642 2023-11-03T10:32:36Z rCRUX generated reference database using NCBI nt blast database downloaded in December 2022. Primer Name: Ford Fish 16S Gene: 16S Length of Target: 330 get_seeds_local() minimum length: 279 get_seeds_local() maximum length: 477 blast_seeds() minimum length: 231 blast_seeds() maximum length: 429 max_to_blast: 1000 Forward Sequence (5'-3'): GCAATCACTTGTCTTTTAAATGAAGACC, GTAATCACTTGTCTTTTAAATGAAGACC Reverse Sequence (5'-3'): GGATTGCGCTGTTATCCCTA Reference: Ford MJ, Hempelmann J, Hanson MB, Ayres KL, Baird RW, et al. (2016) Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces. PLOS ONE 11(1): e0144956. https://doi.org/10.1371/journal.pone.0144956 We chose default rCRUX parameters for get_blast_seeds () of percent coverage of 70, percent identity of 70, evalue 3e+7, and max number of blast alignments = '100000000' and for blast_seeds () of coverage of 70, percent identity of 70, evalue 3e+7, rank of genus, and max number of blast alignments = '10000000'. ... Dataset Killer Whale Orca Orcinus orca Killer whale DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
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ftdatacite |
language |
unknown |
topic |
Metabarcoding eDNA Fish rCRUX Reference barcode database |
spellingShingle |
Metabarcoding eDNA Fish rCRUX Reference barcode database Gold, Zachary Curd, Emily Gal, Luna Gallego, Ramon Nielsen, Shaun rCRUX Generated Ford Fish 16S Reference Database ... |
topic_facet |
Metabarcoding eDNA Fish rCRUX Reference barcode database |
description |
rCRUX generated reference database using NCBI nt blast database downloaded in December 2022. Primer Name: Ford Fish 16S Gene: 16S Length of Target: 330 get_seeds_local() minimum length: 279 get_seeds_local() maximum length: 477 blast_seeds() minimum length: 231 blast_seeds() maximum length: 429 max_to_blast: 1000 Forward Sequence (5'-3'): GCAATCACTTGTCTTTTAAATGAAGACC, GTAATCACTTGTCTTTTAAATGAAGACC Reverse Sequence (5'-3'): GGATTGCGCTGTTATCCCTA Reference: Ford MJ, Hempelmann J, Hanson MB, Ayres KL, Baird RW, et al. (2016) Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces. PLOS ONE 11(1): e0144956. https://doi.org/10.1371/journal.pone.0144956 We chose default rCRUX parameters for get_blast_seeds () of percent coverage of 70, percent identity of 70, evalue 3e+7, and max number of blast alignments = '100000000' and for blast_seeds () of coverage of 70, percent identity of 70, evalue 3e+7, rank of genus, and max number of blast alignments = '10000000'. ... |
format |
Dataset |
author |
Gold, Zachary Curd, Emily Gal, Luna Gallego, Ramon Nielsen, Shaun |
author_facet |
Gold, Zachary Curd, Emily Gal, Luna Gallego, Ramon Nielsen, Shaun |
author_sort |
Gold, Zachary |
title |
rCRUX Generated Ford Fish 16S Reference Database ... |
title_short |
rCRUX Generated Ford Fish 16S Reference Database ... |
title_full |
rCRUX Generated Ford Fish 16S Reference Database ... |
title_fullStr |
rCRUX Generated Ford Fish 16S Reference Database ... |
title_full_unstemmed |
rCRUX Generated Ford Fish 16S Reference Database ... |
title_sort |
rcrux generated ford fish 16s reference database ... |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://dx.doi.org/10.5281/zenodo.7909643 https://zenodo.org/record/7909643 |
genre |
Killer Whale Orca Orcinus orca Killer whale |
genre_facet |
Killer Whale Orca Orcinus orca Killer whale |
op_relation |
https://dx.doi.org/10.5281/zenodo.7909642 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.790964310.5281/zenodo.7909642 |
_version_ |
1784274215810105344 |