Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ...
This dataset contains the genome assembly and associated annotation of the Patagonian Blennie ( Eleginops maclovinus ), the closest extant taxon to the Antarctic notothenioid radiation. In addition to the characterization of the E. maclovinus genome, the dataset includes a description of circadian r...
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ftdatacite:10.5281/zenodo.7829977 2023-06-11T04:07:03+02:00 Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... Rivera-Colón, Angel 2023 https://dx.doi.org/10.5281/zenodo.7829977 https://zenodo.org/record/7829977 unknown Zenodo https://zenodo.org/communities/dryad https://dx.doi.org/10.5061/dryad.qbzkh18nt https://dx.doi.org/10.5281/zenodo.7829978 https://zenodo.org/communities/dryad Open Access GNU Lesser General Public License v3.0 or later https://www.gnu.org/licenses/lgpl-3.0-standalone.html lgpl-3.0+ info:eu-repo/semantics/openAccess notothenioids circadian rhythm genome assembly comparative genomics SoftwareSourceCode Software article 2023 ftdatacite https://doi.org/10.5281/zenodo.782997710.5061/dryad.qbzkh18nt10.5281/zenodo.7829978 2023-06-01T12:19:10Z This dataset contains the genome assembly and associated annotation of the Patagonian Blennie ( Eleginops maclovinus ), the closest extant taxon to the Antarctic notothenioid radiation. In addition to the characterization of the E. maclovinus genome, the dataset includes a description of circadian rhythm orthologs for E. maclovinus , other notothenenioid taxa, and teleost outgroups, as well as a copy of the bioinformatic scripts used for the assembly, annotation, and other downstream analysis. ... : All assembly and annotation files are gzipped, but are otherwise standard bioinformatic formats (i.e., FASTA for genome assembly and coding/amino acid sequences, GTF for annotation, AGP for scaffolding). In addition, bioinformatic scripts for data generation and analysis are in Python (*.py) or Bash (*.sh, but might require the installation of additional, open-source software (e.g., wtdbg2 , BRAKER ) See links for a description of the FASTA (http://www.ncbi.nlm.nih.gov/blast/fasta.shtml), and GTF (https://useast.ensembl.org/info/website/upload/gff.html), and AGP (https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/) file format specifications. File format Specification File Suffix 1 Description *.fa Genome assembly in nucleotide FASTA format. *.agp Assembly structure in AGP format. *.gtf Genome annotation in GTF format. *.cds.fa Genomic sequence for all annotated protein-coding genes in nucleotide FASTA format. *.protein.fa Protein sequence for all annotated protein-coding genes in amino acid FASTA ... Software Antarc* Antarctic DataCite Metadata Store (German National Library of Science and Technology) Antarctic The Antarctic Patagonia |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
topic |
notothenioids circadian rhythm genome assembly comparative genomics |
spellingShingle |
notothenioids circadian rhythm genome assembly comparative genomics Rivera-Colón, Angel Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
topic_facet |
notothenioids circadian rhythm genome assembly comparative genomics |
description |
This dataset contains the genome assembly and associated annotation of the Patagonian Blennie ( Eleginops maclovinus ), the closest extant taxon to the Antarctic notothenioid radiation. In addition to the characterization of the E. maclovinus genome, the dataset includes a description of circadian rhythm orthologs for E. maclovinus , other notothenenioid taxa, and teleost outgroups, as well as a copy of the bioinformatic scripts used for the assembly, annotation, and other downstream analysis. ... : All assembly and annotation files are gzipped, but are otherwise standard bioinformatic formats (i.e., FASTA for genome assembly and coding/amino acid sequences, GTF for annotation, AGP for scaffolding). In addition, bioinformatic scripts for data generation and analysis are in Python (*.py) or Bash (*.sh, but might require the installation of additional, open-source software (e.g., wtdbg2 , BRAKER ) See links for a description of the FASTA (http://www.ncbi.nlm.nih.gov/blast/fasta.shtml), and GTF (https://useast.ensembl.org/info/website/upload/gff.html), and AGP (https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/) file format specifications. File format Specification File Suffix 1 Description *.fa Genome assembly in nucleotide FASTA format. *.agp Assembly structure in AGP format. *.gtf Genome annotation in GTF format. *.cds.fa Genomic sequence for all annotated protein-coding genes in nucleotide FASTA format. *.protein.fa Protein sequence for all annotated protein-coding genes in amino acid FASTA ... |
format |
Software |
author |
Rivera-Colón, Angel |
author_facet |
Rivera-Colón, Angel |
author_sort |
Rivera-Colón, Angel |
title |
Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
title_short |
Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
title_full |
Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
title_fullStr |
Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
title_full_unstemmed |
Supplementary data for: Chromosome-level genome assembly and circadian gene repertoire of the Patagonia blennie Eleginops maclovinus ... |
title_sort |
supplementary data for: chromosome-level genome assembly and circadian gene repertoire of the patagonia blennie eleginops maclovinus ... |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://dx.doi.org/10.5281/zenodo.7829977 https://zenodo.org/record/7829977 |
geographic |
Antarctic The Antarctic Patagonia |
geographic_facet |
Antarctic The Antarctic Patagonia |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
https://zenodo.org/communities/dryad https://dx.doi.org/10.5061/dryad.qbzkh18nt https://dx.doi.org/10.5281/zenodo.7829978 https://zenodo.org/communities/dryad |
op_rights |
Open Access GNU Lesser General Public License v3.0 or later https://www.gnu.org/licenses/lgpl-3.0-standalone.html lgpl-3.0+ info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.782997710.5061/dryad.qbzkh18nt10.5281/zenodo.7829978 |
_version_ |
1768379553436139520 |