Transcriptomics processed data outputs for Sofen et al 2022

Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress...

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Bibliographic Details
Main Author: Gilbert, Naomi
Format: Dataset
Language:unknown
Published: Zenodo 2022
Subjects:
Southern Ocean
Online Access:https://dx.doi.org/10.5281/zenodo.6248083
https://zenodo.org/record/6248083
id ftdatacite:10.5281/zenodo.6248083
record_format openpolar
spelling ftdatacite:10.5281/zenodo.6248083 2023-05-15T18:25:04+02:00 Transcriptomics processed data outputs for Sofen et al 2022 Gilbert, Naomi 2022 https://dx.doi.org/10.5281/zenodo.6248083 https://zenodo.org/record/6248083 unknown Zenodo https://dx.doi.org/10.5281/zenodo.6248082 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess CC-BY Dataset dataset 2022 ftdatacite https://doi.org/10.5281/zenodo.6248083 https://doi.org/10.5281/zenodo.6248082 2022-03-10T14:59:53Z Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress biomarker proteins with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values, DNA-directed RNA Polymerase (RPB1) proteins used for taxonomic charecterization of the surface eukaryotic community with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values. Dataset Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) Southern Ocean
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
description Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress biomarker proteins with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values, DNA-directed RNA Polymerase (RPB1) proteins used for taxonomic charecterization of the surface eukaryotic community with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values.
format Dataset
author Gilbert, Naomi
spellingShingle Gilbert, Naomi
Transcriptomics processed data outputs for Sofen et al 2022
author_facet Gilbert, Naomi
author_sort Gilbert, Naomi
title Transcriptomics processed data outputs for Sofen et al 2022
title_short Transcriptomics processed data outputs for Sofen et al 2022
title_full Transcriptomics processed data outputs for Sofen et al 2022
title_fullStr Transcriptomics processed data outputs for Sofen et al 2022
title_full_unstemmed Transcriptomics processed data outputs for Sofen et al 2022
title_sort transcriptomics processed data outputs for sofen et al 2022
publisher Zenodo
publishDate 2022
url https://dx.doi.org/10.5281/zenodo.6248083
https://zenodo.org/record/6248083
geographic Southern Ocean
geographic_facet Southern Ocean
genre Southern Ocean
genre_facet Southern Ocean
op_relation https://dx.doi.org/10.5281/zenodo.6248082
op_rights Open Access
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
info:eu-repo/semantics/openAccess
op_rightsnorm CC-BY
op_doi https://doi.org/10.5281/zenodo.6248083
https://doi.org/10.5281/zenodo.6248082
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