Transcriptomics processed data outputs for Sofen et al 2022
Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress...
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Online Access: | https://dx.doi.org/10.5281/zenodo.6248083 https://zenodo.org/record/6248083 |
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ftdatacite:10.5281/zenodo.6248083 2023-05-15T18:25:04+02:00 Transcriptomics processed data outputs for Sofen et al 2022 Gilbert, Naomi 2022 https://dx.doi.org/10.5281/zenodo.6248083 https://zenodo.org/record/6248083 unknown Zenodo https://dx.doi.org/10.5281/zenodo.6248082 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess CC-BY Dataset dataset 2022 ftdatacite https://doi.org/10.5281/zenodo.6248083 https://doi.org/10.5281/zenodo.6248082 2022-03-10T14:59:53Z Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress biomarker proteins with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values, DNA-directed RNA Polymerase (RPB1) proteins used for taxonomic charecterization of the surface eukaryotic community with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values. Dataset Southern Ocean DataCite Metadata Store (German National Library of Science and Technology) Southern Ocean |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
description |
Processed data ouputs for transcripomtics analysis of Southern Ocean Time Series eukaryotic microbial communities. Files include: protein and HMM database used for iron stress biomarker screening, Proteins that hit to the HMM database curated to search the metatranscriptomic dataset for iron stress biomarker proteins with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values, DNA-directed RNA Polymerase (RPB1) proteins used for taxonomic charecterization of the surface eukaryotic community with protein ID's, taxonomic annotation (EUKulele, MMTESP) and calculated transcripts per million (TPM) values. |
format |
Dataset |
author |
Gilbert, Naomi |
spellingShingle |
Gilbert, Naomi Transcriptomics processed data outputs for Sofen et al 2022 |
author_facet |
Gilbert, Naomi |
author_sort |
Gilbert, Naomi |
title |
Transcriptomics processed data outputs for Sofen et al 2022 |
title_short |
Transcriptomics processed data outputs for Sofen et al 2022 |
title_full |
Transcriptomics processed data outputs for Sofen et al 2022 |
title_fullStr |
Transcriptomics processed data outputs for Sofen et al 2022 |
title_full_unstemmed |
Transcriptomics processed data outputs for Sofen et al 2022 |
title_sort |
transcriptomics processed data outputs for sofen et al 2022 |
publisher |
Zenodo |
publishDate |
2022 |
url |
https://dx.doi.org/10.5281/zenodo.6248083 https://zenodo.org/record/6248083 |
geographic |
Southern Ocean |
geographic_facet |
Southern Ocean |
genre |
Southern Ocean |
genre_facet |
Southern Ocean |
op_relation |
https://dx.doi.org/10.5281/zenodo.6248082 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.5281/zenodo.6248083 https://doi.org/10.5281/zenodo.6248082 |
_version_ |
1766206225712676864 |