Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data
This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: NBW_SNPS_f...
Main Authors: | , , , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
Zenodo
2021
|
Subjects: | |
Online Access: | https://dx.doi.org/10.5281/zenodo.5772727 https://zenodo.org/record/5772727 |
id |
ftdatacite:10.5281/zenodo.5772727 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.5281/zenodo.5772727 2023-05-15T16:36:26+02:00 Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data de Greef, Evelien Einfeldt, Anthony Miller, Patrick Ferguson, Steve Garroway, Colin Lefort, Kyle Paterson, Ian Bentzen, Paul Feyrer, Laura 2021 https://dx.doi.org/10.5281/zenodo.5772727 https://zenodo.org/record/5772727 unknown Zenodo https://dx.doi.org/10.5281/zenodo.4718123 Closed Access info:eu-repo/semantics/closedAccess dataset Dataset 2021 ftdatacite https://doi.org/10.5281/zenodo.5772727 https://doi.org/10.5281/zenodo.4718123 2022-02-08T16:27:35Z This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: NBW_SNPS_filtered_demography_analyses.vcf.gz - Filtered SNPs for demography analyses. Filtered for quality (removed qual < 20, mq < 30, qd < 2, missingness > 0.4), non-biallelic sites, autosomes, structural variants, minimum scaffold length 100kb. NBW_SNPS_filtered_imputed_haplotype_analyses.vcf.gz - Filtered and imputed SNPs for haplotype analyses. Filtered for quality, non-biallelic sites, autosomes, structural variants, max-missingness 0.1, minor allele count 2, minimum scaffold length 50kb. : We recommend using "Evaluating population structure in the northern bottlenose whale, Hyperoodon ampullatus, using genomic resequencing data" (10.5281/zenodo.5719248), as these data were consolidated after revisions. Dataset hyperoodon ampullatus Northern bottlenose whale DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
unknown |
description |
This dataset contains resequencing data used in our northern bottlenose whale genomics research. In this project, we analyzed demographic history and regions under selection. Source code for genomic analyses is available at github.com/edegreef/NBW-resequencing. Data uploaded here contain: NBW_SNPS_filtered_demography_analyses.vcf.gz - Filtered SNPs for demography analyses. Filtered for quality (removed qual < 20, mq < 30, qd < 2, missingness > 0.4), non-biallelic sites, autosomes, structural variants, minimum scaffold length 100kb. NBW_SNPS_filtered_imputed_haplotype_analyses.vcf.gz - Filtered and imputed SNPs for haplotype analyses. Filtered for quality, non-biallelic sites, autosomes, structural variants, max-missingness 0.1, minor allele count 2, minimum scaffold length 50kb. : We recommend using "Evaluating population structure in the northern bottlenose whale, Hyperoodon ampullatus, using genomic resequencing data" (10.5281/zenodo.5719248), as these data were consolidated after revisions. |
format |
Dataset |
author |
de Greef, Evelien Einfeldt, Anthony Miller, Patrick Ferguson, Steve Garroway, Colin Lefort, Kyle Paterson, Ian Bentzen, Paul Feyrer, Laura |
spellingShingle |
de Greef, Evelien Einfeldt, Anthony Miller, Patrick Ferguson, Steve Garroway, Colin Lefort, Kyle Paterson, Ian Bentzen, Paul Feyrer, Laura Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
author_facet |
de Greef, Evelien Einfeldt, Anthony Miller, Patrick Ferguson, Steve Garroway, Colin Lefort, Kyle Paterson, Ian Bentzen, Paul Feyrer, Laura |
author_sort |
de Greef, Evelien |
title |
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
title_short |
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
title_full |
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
title_fullStr |
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
title_full_unstemmed |
Demographic history and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus, through genomic resequencing data |
title_sort |
demographic history and signatures of selection in the northern bottlenose whale, hyperoodon ampullatus, through genomic resequencing data |
publisher |
Zenodo |
publishDate |
2021 |
url |
https://dx.doi.org/10.5281/zenodo.5772727 https://zenodo.org/record/5772727 |
genre |
hyperoodon ampullatus Northern bottlenose whale |
genre_facet |
hyperoodon ampullatus Northern bottlenose whale |
op_relation |
https://dx.doi.org/10.5281/zenodo.4718123 |
op_rights |
Closed Access info:eu-repo/semantics/closedAccess |
op_doi |
https://doi.org/10.5281/zenodo.5772727 https://doi.org/10.5281/zenodo.4718123 |
_version_ |
1766026771363266560 |