Visualizing DNA folding and RNA in embryos at single-cell resolution
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed...
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ftdatacite:10.5281/zenodo.4741213 2023-05-15T17:53:41+02:00 Visualizing DNA folding and RNA in embryos at single-cell resolution Mateo, Leslie J. Sedona E. Murphy Hafner, Antonina Cinquini, Isaac S. Walker, Carly A. Boettiger, Alistair N. 2019 https://dx.doi.org/10.5281/zenodo.4741213 https://zenodo.org/record/4741213 en eng Zenodo https://dx.doi.org/10.1038/s41586-019-1035-4 https://dx.doi.org/10.5281/zenodo.4741214 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess CC-BY ORCA, super-resolution, 3D genome, spatial omics dataset Dataset 2019 ftdatacite https://doi.org/10.5281/zenodo.4741213 https://doi.org/10.1038/s41586-019-1035-4 https://doi.org/10.5281/zenodo.4741214 2021-11-05T12:55:41Z See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. Dataset Orca DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
ORCA, super-resolution, 3D genome, spatial omics |
spellingShingle |
ORCA, super-resolution, 3D genome, spatial omics Mateo, Leslie J. Sedona E. Murphy Hafner, Antonina Cinquini, Isaac S. Walker, Carly A. Boettiger, Alistair N. Visualizing DNA folding and RNA in embryos at single-cell resolution |
topic_facet |
ORCA, super-resolution, 3D genome, spatial omics |
description |
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. |
format |
Dataset |
author |
Mateo, Leslie J. Sedona E. Murphy Hafner, Antonina Cinquini, Isaac S. Walker, Carly A. Boettiger, Alistair N. |
author_facet |
Mateo, Leslie J. Sedona E. Murphy Hafner, Antonina Cinquini, Isaac S. Walker, Carly A. Boettiger, Alistair N. |
author_sort |
Mateo, Leslie J. |
title |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_short |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_fullStr |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full_unstemmed |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_sort |
visualizing dna folding and rna in embryos at single-cell resolution |
publisher |
Zenodo |
publishDate |
2019 |
url |
https://dx.doi.org/10.5281/zenodo.4741213 https://zenodo.org/record/4741213 |
genre |
Orca |
genre_facet |
Orca |
op_relation |
https://dx.doi.org/10.1038/s41586-019-1035-4 https://dx.doi.org/10.5281/zenodo.4741214 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.5281/zenodo.4741213 https://doi.org/10.1038/s41586-019-1035-4 https://doi.org/10.5281/zenodo.4741214 |
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1766161397264154624 |