Antarctic endolithic bacterial metagenome-assembled genomes
Bacterial assembled genomes and annotation data from the Antarctic cryptoendolithic communities collected during the XXXI (2015-16) Italian Antarctic Expedition. The dataset consists of 4 zip archives and 3 files (comma-separated values). Here is a brief summary of their contents: MAGs: high quality...
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ftdatacite:10.5281/zenodo.4295864 2023-05-15T13:42:04+02:00 Antarctic endolithic bacterial metagenome-assembled genomes Coleine, Claudia Albanese, Davide Donati, Claudio Stajich, Jason E. Selbmann, Laura 2020 https://dx.doi.org/10.5281/zenodo.4295864 https://zenodo.org/record/4295864 unknown Zenodo https://dx.doi.org/10.5281/zenodo.3671352 Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess CC-BY dataset Dataset 2020 ftdatacite https://doi.org/10.5281/zenodo.4295864 https://doi.org/10.5281/zenodo.3671352 2021-11-05T12:55:41Z Bacterial assembled genomes and annotation data from the Antarctic cryptoendolithic communities collected during the XXXI (2015-16) Italian Antarctic Expedition. The dataset consists of 4 zip archives and 3 files (comma-separated values). Here is a brief summary of their contents: MAGs: high quality (HQ) and medium quality (MQ) bacterial metagenome assembled genomes. MAGs_metadata: completeness, contamination, length, N50, GTDB classification for each MAG. MAGs_HQ_CDS: translated coding sequences for each high quality MAG. MAGs_HQ_Annotation: EggNOG annotation files. For each high quality MAG, the following files are included: eggnog.emapper.annotations: the final EggNOG annotation; eggnog.emapper.hmm_hits: list of significant hits to eggNOG Orthologous Groups eggnog.emapper.seed_orthologs: best match of each query within the best Orthologous Group (OG) reported in the eggnog.emapper.hmm_hits file . Jiangella_Antarctica: Candidatus Jiangella antarctica representative genome (UniValnordMG_2_bin.36.fa) and the extracted ribosomal RNA genes (rRNA.fasta). Order_MSA: protein multiple sequence alignments using the 120 GTDB bacterial marker genes. These alignments were used to estimate divergence times on orders containing at least 4 CBS, for a total of 19 orders. Samples_accession : table that relates to the NCBI deposition of the shotgun metagenomes, the following info are included: NCBI Sequence Read Archive (SRA) BioProject accession numbers JGI Integrated Microbial Genomes & Microbiomes site IDs N50 values Metadata Samples_metadata: geographic coordinates, temperature, relative humidity and sampling date are reported. Dataset Antarc* Antarctic Antarctica DataCite Metadata Store (German National Library of Science and Technology) Antarctic The Antarctic |
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DataCite Metadata Store (German National Library of Science and Technology) |
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description |
Bacterial assembled genomes and annotation data from the Antarctic cryptoendolithic communities collected during the XXXI (2015-16) Italian Antarctic Expedition. The dataset consists of 4 zip archives and 3 files (comma-separated values). Here is a brief summary of their contents: MAGs: high quality (HQ) and medium quality (MQ) bacterial metagenome assembled genomes. MAGs_metadata: completeness, contamination, length, N50, GTDB classification for each MAG. MAGs_HQ_CDS: translated coding sequences for each high quality MAG. MAGs_HQ_Annotation: EggNOG annotation files. For each high quality MAG, the following files are included: eggnog.emapper.annotations: the final EggNOG annotation; eggnog.emapper.hmm_hits: list of significant hits to eggNOG Orthologous Groups eggnog.emapper.seed_orthologs: best match of each query within the best Orthologous Group (OG) reported in the eggnog.emapper.hmm_hits file . Jiangella_Antarctica: Candidatus Jiangella antarctica representative genome (UniValnordMG_2_bin.36.fa) and the extracted ribosomal RNA genes (rRNA.fasta). Order_MSA: protein multiple sequence alignments using the 120 GTDB bacterial marker genes. These alignments were used to estimate divergence times on orders containing at least 4 CBS, for a total of 19 orders. Samples_accession : table that relates to the NCBI deposition of the shotgun metagenomes, the following info are included: NCBI Sequence Read Archive (SRA) BioProject accession numbers JGI Integrated Microbial Genomes & Microbiomes site IDs N50 values Metadata Samples_metadata: geographic coordinates, temperature, relative humidity and sampling date are reported. |
format |
Dataset |
author |
Coleine, Claudia Albanese, Davide Donati, Claudio Stajich, Jason E. Selbmann, Laura |
spellingShingle |
Coleine, Claudia Albanese, Davide Donati, Claudio Stajich, Jason E. Selbmann, Laura Antarctic endolithic bacterial metagenome-assembled genomes |
author_facet |
Coleine, Claudia Albanese, Davide Donati, Claudio Stajich, Jason E. Selbmann, Laura |
author_sort |
Coleine, Claudia |
title |
Antarctic endolithic bacterial metagenome-assembled genomes |
title_short |
Antarctic endolithic bacterial metagenome-assembled genomes |
title_full |
Antarctic endolithic bacterial metagenome-assembled genomes |
title_fullStr |
Antarctic endolithic bacterial metagenome-assembled genomes |
title_full_unstemmed |
Antarctic endolithic bacterial metagenome-assembled genomes |
title_sort |
antarctic endolithic bacterial metagenome-assembled genomes |
publisher |
Zenodo |
publishDate |
2020 |
url |
https://dx.doi.org/10.5281/zenodo.4295864 https://zenodo.org/record/4295864 |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic Antarctica |
genre_facet |
Antarc* Antarctic Antarctica |
op_relation |
https://dx.doi.org/10.5281/zenodo.3671352 |
op_rights |
Open Access Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.5281/zenodo.4295864 https://doi.org/10.5281/zenodo.3671352 |
_version_ |
1766162294747693056 |