qcscine/utilities: Release 10.0.0 ...

Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calcul...

Full description

Bibliographic Details
Main Authors: Baiardi, Alberto, Bensberg, Moritz, Bosia, Francesco, Brunken, Christoph, Csizi, Katja-Sophia, Feldmann, Robin, Glaser, Nina, Grimmel, Stephanie, Gugler, Stefan, Haag, Moritz, Heuer, Michael Andree, Landis, Joel, Müller, Charlotte, Polonius, Severin, Simm, Gregor, Sobez, Jan-Grimo, Steiner, Miguel, Türtscher, Paul L., Unsleber, Jan Patrick, Vaucher, Alain, Weymuth, Thomas, Reiher, Markus
Format: Article in Journal/Newspaper
Language:unknown
Published: Zenodo 2024
Subjects:
Online Access:https://dx.doi.org/10.5281/zenodo.3828691
https://zenodo.org/doi/10.5281/zenodo.3828691
id ftdatacite:10.5281/zenodo.3828691
record_format openpolar
spelling ftdatacite:10.5281/zenodo.3828691 2024-09-15T18:28:55+00:00 qcscine/utilities: Release 10.0.0 ... Baiardi, Alberto Bensberg, Moritz Bosia, Francesco Brunken, Christoph Csizi, Katja-Sophia Feldmann, Robin Glaser, Nina Grimmel, Stephanie Gugler, Stefan Haag, Moritz Heuer, Michael Andree Landis, Joel Müller, Charlotte Polonius, Severin Simm, Gregor Sobez, Jan-Grimo Steiner, Miguel Türtscher, Paul L. Unsleber, Jan Patrick Vaucher, Alain Weymuth, Thomas Reiher, Markus 2024 https://dx.doi.org/10.5281/zenodo.3828691 https://zenodo.org/doi/10.5281/zenodo.3828691 unknown Zenodo https://github.com/qcscine/utilities/tree/10.0.0 https://github.com/qcscine/utilities/tree/10.0.0 https://dx.doi.org/10.5281/zenodo.4293213 https://dx.doi.org/10.5281/zenodo.7569655 https://dx.doi.org/10.5281/zenodo.3828692 https://dx.doi.org/10.5281/zenodo.7928050 https://dx.doi.org/10.5281/zenodo.4293510 https://dx.doi.org/10.5281/zenodo.5782808 https://dx.doi.org/10.5281/zenodo.6984574 https://dx.doi.org/10.5281/zenodo.6694755 https://dx.doi.org/10.5281/zenodo.10159264 https://dx.doi.org/10.5281/zenodo.13372905 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 SoftwareSourceCode article Software 2024 ftdatacite https://doi.org/10.5281/zenodo.382869110.5281/zenodo.429321310.5281/zenodo.756965510.5281/zenodo.382869210.5281/zenodo.792805010.5281/zenodo.429351010.5281/zenodo.578280810.5281/zenodo.698457410.5281/zenodo.669475510.5281/zenodo.1015926410.5281/zenodo.133 2024-09-02T09:17:24Z Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calculation. The Thermochemical Calculator can now be constructed with a PartialHessian. The property PartialGradients is now available. It is intended to signal different contributions to the total gradients, e.g., the QM gradient contribution and the MM gradient contribution in QM/MM. Added a class to store derivatives in a more flexible manner. The Harmonic oscillator, particle-in-a-box, static-rotor free energy for zero Kelvin is now set to the sum of the electronic energy and zero point vibrational energy. Fixed a bug which lead to a crash when extracting thermochemical information from the Orca output for a temperature of zero Kelvin. Relative paths for the point charge file in electrostatic embedding calculations ... Article in Journal/Newspaper Orca DataCite
institution Open Polar
collection DataCite
op_collection_id ftdatacite
language unknown
description Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calculation. The Thermochemical Calculator can now be constructed with a PartialHessian. The property PartialGradients is now available. It is intended to signal different contributions to the total gradients, e.g., the QM gradient contribution and the MM gradient contribution in QM/MM. Added a class to store derivatives in a more flexible manner. The Harmonic oscillator, particle-in-a-box, static-rotor free energy for zero Kelvin is now set to the sum of the electronic energy and zero point vibrational energy. Fixed a bug which lead to a crash when extracting thermochemical information from the Orca output for a temperature of zero Kelvin. Relative paths for the point charge file in electrostatic embedding calculations ...
format Article in Journal/Newspaper
author Baiardi, Alberto
Bensberg, Moritz
Bosia, Francesco
Brunken, Christoph
Csizi, Katja-Sophia
Feldmann, Robin
Glaser, Nina
Grimmel, Stephanie
Gugler, Stefan
Haag, Moritz
Heuer, Michael Andree
Landis, Joel
Müller, Charlotte
Polonius, Severin
Simm, Gregor
Sobez, Jan-Grimo
Steiner, Miguel
Türtscher, Paul L.
Unsleber, Jan Patrick
Vaucher, Alain
Weymuth, Thomas
Reiher, Markus
spellingShingle Baiardi, Alberto
Bensberg, Moritz
Bosia, Francesco
Brunken, Christoph
Csizi, Katja-Sophia
Feldmann, Robin
Glaser, Nina
Grimmel, Stephanie
Gugler, Stefan
Haag, Moritz
Heuer, Michael Andree
Landis, Joel
Müller, Charlotte
Polonius, Severin
Simm, Gregor
Sobez, Jan-Grimo
Steiner, Miguel
Türtscher, Paul L.
Unsleber, Jan Patrick
Vaucher, Alain
Weymuth, Thomas
Reiher, Markus
qcscine/utilities: Release 10.0.0 ...
author_facet Baiardi, Alberto
Bensberg, Moritz
Bosia, Francesco
Brunken, Christoph
Csizi, Katja-Sophia
Feldmann, Robin
Glaser, Nina
Grimmel, Stephanie
Gugler, Stefan
Haag, Moritz
Heuer, Michael Andree
Landis, Joel
Müller, Charlotte
Polonius, Severin
Simm, Gregor
Sobez, Jan-Grimo
Steiner, Miguel
Türtscher, Paul L.
Unsleber, Jan Patrick
Vaucher, Alain
Weymuth, Thomas
Reiher, Markus
author_sort Baiardi, Alberto
title qcscine/utilities: Release 10.0.0 ...
title_short qcscine/utilities: Release 10.0.0 ...
title_full qcscine/utilities: Release 10.0.0 ...
title_fullStr qcscine/utilities: Release 10.0.0 ...
title_full_unstemmed qcscine/utilities: Release 10.0.0 ...
title_sort qcscine/utilities: release 10.0.0 ...
publisher Zenodo
publishDate 2024
url https://dx.doi.org/10.5281/zenodo.3828691
https://zenodo.org/doi/10.5281/zenodo.3828691
genre Orca
genre_facet Orca
op_relation https://github.com/qcscine/utilities/tree/10.0.0
https://github.com/qcscine/utilities/tree/10.0.0
https://dx.doi.org/10.5281/zenodo.4293213
https://dx.doi.org/10.5281/zenodo.7569655
https://dx.doi.org/10.5281/zenodo.3828692
https://dx.doi.org/10.5281/zenodo.7928050
https://dx.doi.org/10.5281/zenodo.4293510
https://dx.doi.org/10.5281/zenodo.5782808
https://dx.doi.org/10.5281/zenodo.6984574
https://dx.doi.org/10.5281/zenodo.6694755
https://dx.doi.org/10.5281/zenodo.10159264
https://dx.doi.org/10.5281/zenodo.13372905
op_rights Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
cc-by-4.0
op_doi https://doi.org/10.5281/zenodo.382869110.5281/zenodo.429321310.5281/zenodo.756965510.5281/zenodo.382869210.5281/zenodo.792805010.5281/zenodo.429351010.5281/zenodo.578280810.5281/zenodo.698457410.5281/zenodo.669475510.5281/zenodo.1015926410.5281/zenodo.133
_version_ 1810470350958362624