qcscine/utilities: Release 10.0.0 ...
Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calcul...
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Online Access: | https://dx.doi.org/10.5281/zenodo.3828691 https://zenodo.org/doi/10.5281/zenodo.3828691 |
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ftdatacite:10.5281/zenodo.3828691 2024-09-15T18:28:55+00:00 qcscine/utilities: Release 10.0.0 ... Baiardi, Alberto Bensberg, Moritz Bosia, Francesco Brunken, Christoph Csizi, Katja-Sophia Feldmann, Robin Glaser, Nina Grimmel, Stephanie Gugler, Stefan Haag, Moritz Heuer, Michael Andree Landis, Joel Müller, Charlotte Polonius, Severin Simm, Gregor Sobez, Jan-Grimo Steiner, Miguel Türtscher, Paul L. Unsleber, Jan Patrick Vaucher, Alain Weymuth, Thomas Reiher, Markus 2024 https://dx.doi.org/10.5281/zenodo.3828691 https://zenodo.org/doi/10.5281/zenodo.3828691 unknown Zenodo https://github.com/qcscine/utilities/tree/10.0.0 https://github.com/qcscine/utilities/tree/10.0.0 https://dx.doi.org/10.5281/zenodo.4293213 https://dx.doi.org/10.5281/zenodo.7569655 https://dx.doi.org/10.5281/zenodo.3828692 https://dx.doi.org/10.5281/zenodo.7928050 https://dx.doi.org/10.5281/zenodo.4293510 https://dx.doi.org/10.5281/zenodo.5782808 https://dx.doi.org/10.5281/zenodo.6984574 https://dx.doi.org/10.5281/zenodo.6694755 https://dx.doi.org/10.5281/zenodo.10159264 https://dx.doi.org/10.5281/zenodo.13372905 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 SoftwareSourceCode article Software 2024 ftdatacite https://doi.org/10.5281/zenodo.382869110.5281/zenodo.429321310.5281/zenodo.756965510.5281/zenodo.382869210.5281/zenodo.792805010.5281/zenodo.429351010.5281/zenodo.578280810.5281/zenodo.698457410.5281/zenodo.669475510.5281/zenodo.1015926410.5281/zenodo.133 2024-09-02T09:17:24Z Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calculation. The Thermochemical Calculator can now be constructed with a PartialHessian. The property PartialGradients is now available. It is intended to signal different contributions to the total gradients, e.g., the QM gradient contribution and the MM gradient contribution in QM/MM. Added a class to store derivatives in a more flexible manner. The Harmonic oscillator, particle-in-a-box, static-rotor free energy for zero Kelvin is now set to the sum of the electronic energy and zero point vibrational energy. Fixed a bug which lead to a crash when extracting thermochemical information from the Orca output for a temperature of zero Kelvin. Relative paths for the point charge file in electrostatic embedding calculations ... Article in Journal/Newspaper Orca DataCite |
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Changes: Tests for the QM/MM transition state optimizer In case the atom coordinates given to a GeometryOptimizer are identical to the coordinates of the underlying calculator and a Hessian is requested, it is checked if this result is already present in the calculator to avoid an unnecessary calculation. The Thermochemical Calculator can now be constructed with a PartialHessian. The property PartialGradients is now available. It is intended to signal different contributions to the total gradients, e.g., the QM gradient contribution and the MM gradient contribution in QM/MM. Added a class to store derivatives in a more flexible manner. The Harmonic oscillator, particle-in-a-box, static-rotor free energy for zero Kelvin is now set to the sum of the electronic energy and zero point vibrational energy. Fixed a bug which lead to a crash when extracting thermochemical information from the Orca output for a temperature of zero Kelvin. Relative paths for the point charge file in electrostatic embedding calculations ... |
format |
Article in Journal/Newspaper |
author |
Baiardi, Alberto Bensberg, Moritz Bosia, Francesco Brunken, Christoph Csizi, Katja-Sophia Feldmann, Robin Glaser, Nina Grimmel, Stephanie Gugler, Stefan Haag, Moritz Heuer, Michael Andree Landis, Joel Müller, Charlotte Polonius, Severin Simm, Gregor Sobez, Jan-Grimo Steiner, Miguel Türtscher, Paul L. Unsleber, Jan Patrick Vaucher, Alain Weymuth, Thomas Reiher, Markus |
spellingShingle |
Baiardi, Alberto Bensberg, Moritz Bosia, Francesco Brunken, Christoph Csizi, Katja-Sophia Feldmann, Robin Glaser, Nina Grimmel, Stephanie Gugler, Stefan Haag, Moritz Heuer, Michael Andree Landis, Joel Müller, Charlotte Polonius, Severin Simm, Gregor Sobez, Jan-Grimo Steiner, Miguel Türtscher, Paul L. Unsleber, Jan Patrick Vaucher, Alain Weymuth, Thomas Reiher, Markus qcscine/utilities: Release 10.0.0 ... |
author_facet |
Baiardi, Alberto Bensberg, Moritz Bosia, Francesco Brunken, Christoph Csizi, Katja-Sophia Feldmann, Robin Glaser, Nina Grimmel, Stephanie Gugler, Stefan Haag, Moritz Heuer, Michael Andree Landis, Joel Müller, Charlotte Polonius, Severin Simm, Gregor Sobez, Jan-Grimo Steiner, Miguel Türtscher, Paul L. Unsleber, Jan Patrick Vaucher, Alain Weymuth, Thomas Reiher, Markus |
author_sort |
Baiardi, Alberto |
title |
qcscine/utilities: Release 10.0.0 ... |
title_short |
qcscine/utilities: Release 10.0.0 ... |
title_full |
qcscine/utilities: Release 10.0.0 ... |
title_fullStr |
qcscine/utilities: Release 10.0.0 ... |
title_full_unstemmed |
qcscine/utilities: Release 10.0.0 ... |
title_sort |
qcscine/utilities: release 10.0.0 ... |
publisher |
Zenodo |
publishDate |
2024 |
url |
https://dx.doi.org/10.5281/zenodo.3828691 https://zenodo.org/doi/10.5281/zenodo.3828691 |
genre |
Orca |
genre_facet |
Orca |
op_relation |
https://github.com/qcscine/utilities/tree/10.0.0 https://github.com/qcscine/utilities/tree/10.0.0 https://dx.doi.org/10.5281/zenodo.4293213 https://dx.doi.org/10.5281/zenodo.7569655 https://dx.doi.org/10.5281/zenodo.3828692 https://dx.doi.org/10.5281/zenodo.7928050 https://dx.doi.org/10.5281/zenodo.4293510 https://dx.doi.org/10.5281/zenodo.5782808 https://dx.doi.org/10.5281/zenodo.6984574 https://dx.doi.org/10.5281/zenodo.6694755 https://dx.doi.org/10.5281/zenodo.10159264 https://dx.doi.org/10.5281/zenodo.13372905 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.5281/zenodo.382869110.5281/zenodo.429321310.5281/zenodo.756965510.5281/zenodo.382869210.5281/zenodo.792805010.5281/zenodo.429351010.5281/zenodo.578280810.5281/zenodo.698457410.5281/zenodo.669475510.5281/zenodo.1015926410.5281/zenodo.133 |
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