Supplement of manuscript "microorganisms-746193"

• Main Authors: Elferink, Stephanie, John, Uwe, Neuhaus, Stefan, Wohlrab, Sylke
• Format: Dataset
• Language: unknown
• Published: Zenodo 2020
• Subjects: microplancton; microeukaryotic community; DNA-metabarcoding; marine pelagic community; phylogenetic placement; Alfred Wegener Institute
• Online Access: https://dx.doi.org/10.5281/zenodo.3741719; https://zenodo.org/record/3741719

This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, [e-mail], Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Uwe John, [e-mail], Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity Stefan Neuhaus, [e-mail], Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Sylke Wohlrab, [e-mail], Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity JOURNAL: MDPI - microorganisms MS-ID: microorganisms-746193 HOWTO: Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI: 10.1016/j.dsr.2016.11.002). CONTENT: reference databases: - Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb - Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb query sequence files: - Alveolata_seqtab_SIGN_dada2.fasta - Alveolata_seqtab_SIGN_dada2.fasta created output folder including the taxonomic annotation: - Alveolata_seqtab_SIGN_dada2.place.out - Stramenopiles_seqtab_SIGN_dada2.place.out text file containing the used commands: - commands