Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland

• Main Authors: Andriollo, Tommy, Ruedi, Manuel
• Format: Article in Journal/Newspaper
• Language: English
• Published: Zenodo 2018
• Subjects: Biodiversity; Taxonomy; Taxponomy; Animalia; Chordata; Mammalia; Chiroptera; Plecotus; Ballard; Buckley; Marchesi; Meier; Rasmussen; Rhone; Wauters; Pipistrellus pipistrellus
• Online Access: https://dx.doi.org/10.5281/zenodo.1196012; https://zenodo.org/record/1196012

uploaded for Revue Suisse de Zoologie by Plazi : {"references": ["Alberdi A., Aizpurua O., Aihartza J., Garin I. 2014. Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris. Frontiers in Zoology 11: 014-0077. https://doi.org/10.1186/s12983-014-0077-6", "Andriollo T., Naciri Y., Ruedi M. 2015. Two mitochondrial barcodes for one biological species: The case of European Kuhl's pipistrelles (Chiroptera). Plos One 10: e0134881. https://doi.org/10.1371/journal.pone.0134881.", "Artyushin I.V., Bannikova A.A., Lebedev V.S., Kruskop S.V. 2009. Mitochondrial DNA relationships among North Palaearctic Eptesicus (Vespertilionidae, Chiroptera) and past hybridization between Common Serotine and Northern Bat. Zootaxa 2262: 40-52. https://doi.org/10.11646/zootaxa.2262.1.2", "Ashrafi S., Bontadina F., Kiefer A., Pavlinic I., Arlettaz R. 2010. Multiple morphological characters needed for field identification of cryptic long-eared bat species around the Swiss Alps. Journal of Zoology 281: 241-248. https://doi.org/10.1111/j.1469-7998.2010.00697.x", "Ashrafi S., Rutishauser M., Ecker K., Obrist M.K., Arlettaz R., Bontadina F. 2013. Habitat selection of three cryptic Plecotus bat species in the European Alps reveals contrasting implications for conservation. Biodiversity and Conservation 22: 2751-2766. https://doi.org/10.1007/s10531-013-0551-z", "Ballard J.W.O., Whitlock M.C. 2004. The incomplete natural history of mitochondria. Molecular Ecology 13: 729-744. https://doi.org/10.1046/j.1365-294X.2003.02063.x", "Barataud M. 2015. Acoustic ecology of European bats: species, identification, study of their habitats and foraging behaviour. Biotope Editions, Meze; Museum national d'histoire naturelle, Paris, 352 pp.", "Bauer K. 2001. Bestimmungsschlussel osterreichischer Saugetiere anhand von Schadelmerkmalen [pp. 863-887]. In: Spitzenberger F. (ed). Die Saugetierfauna Osterreichs, Bundesministerium fur Land- und Forstwirtschaft, Umwelt und Wasserwirtschaft, Graz.", "Benda P., Ivanova T. 2003. Long-eared bats, genus Plecotus (Mammalia: Chiroptera), in Bulgaria: A revision of systematic and distributional status. Casopis Narodniho muzea Rada prirodovedna 172: 157-172.", "Benda P., Kiefer A., Hanak V., Veith M. 2004. Systematic status of African populations of long-eared bats, genus Plecotus (Mammalia: Chiroptera). Folia Zoologica 53 (Monograph 1): 1-47. https://doi.org/10.3161/001.006.0202", "Berthier P., Excoffier L., Ruedi M. 2006. Recurrent replacement of mtDNA and cryptic hybridization between two sibling bat species Myotis myotis and Myotis blythii. Proceedings of the Royal Society B: Biological Sciences 273: 3101- 3109. https://doi.org/10.1098/rspb.2006.3680", "Bickford D., Lohman D.J., Sodhi N.S., Ng P.K.L., Meier R., Winker K., Ingram K.K., Das I. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22: 148-155. https://doi.org/10.1016/j.tree.2006.11.004", "Blant M., Magnin B., Ruedi M. 2008. Cle des cranes (Chiropteres) (pp. 132-145). In: Marchesi P., Blant M. & Capt S. (ed.). Mammiferes de Suisse - Cles de determination. Fauna Helvetica, CSCF & SSBF, Neuchatel, Switzerland, Vol 21.", "Bohnenstengel T., Krattli H., Obrist M.K., Bontadina F., Jaberg C., Ruedi M., Moeschler P. 2014. Liste rouge Chauvessouris. Especes menacees en Suisse, etat 2011. L'environnement pratique. Office federal de l'environnement, Berne; Centre Suisse de Cartographie de la Faune, Neuchatel; Centres suisses de coordination pour l'etude et la protection des chauves-souris, Geneve et Zurich; Institut federal de recherches sur la foret, la neige et le paysage, Birmensdorf, 95 pp.", "Boston E.S.M., Hanrahan N., Puechmaille S.J., Ruedi M., Buckley D.J., Lundy M.G., Scott D.D., Prodohl P. A., Montgomery W.I., Teeling E.C. 2011. A rapid PCR-based assay for identification of cryptic Myotis spp. (M. mystacinus, M. brandtii and M. alcathoe). Conservation Genetics Resources 3: 557-563. https://doi.org/10.1007/s12686-011-9404-9", "Courtois J.-Y., Rist D., Beuneux G. 2011. Les chauves-souris de Corse. Albiana, 166 pp.", "Debernardi P., Patriarca E. 2007. The bats of the Lake Maggiore Piedmont shore (NW Italy). Hystrix 18: 39-55.", "Fischer, J. B. 1829. Synopsis Mammalium. Cotta, Stuttgart, 752 pp.", "Galimberti A., Spada M., Russo D., Mucedda M., Agnelli P., Crottini A., Ferri E., Martinoli A., Casiraghi M. 2012. Integrated Operational Taxonomic Units (IOTUs) in echolocating bats: A bridge between molecular and traditional taxonomy. Plos One 7: e40122. ARTN e40122. https://doi.org/10.1371/journal.pone.0040122", "Giguet-Covex C., Pansu J., Arnaud F., Rey P.-J., Griggo C., Gielly L., Domaizon I., Coissac E., David F., Choler P., Poulenard J., Taberlet P. 2014. Long livestock farming history and human landscape shaping revealed by lake sediment DNA. Nature Communications 5. https://doi.org/10.1038/ncomms4211", "Gillieron J., Schonbachler C., Rochet C., Ruedi M. 2015. Atlas des chauves-souris du bassin genevois. CCO-Geneve, 262 pp.", "Gonseth Y., Wohlgemuth T., Sansonnens B., Buttler A. 2001. Les regions biogeographiques de la Suisse - Explications et division standard (Office federal de l'environnement, des forets et du paysage, Bern).", "Hausser J. ed. 1995. Mammiferes de la Suisse - Repartition, Biologie, Ecologie. Birkhauser Verlag, Basel, Switzerland, 501 pp.", "Haussler U., Braun M. 1991. Sammlung einheimischer Fledermause (Mammalia: Chiroptera) des Staatlichen Museums fur Naturkunde Karlsruhe - Teil II: Plecotus. Carolinea 49: 101-114.", "Hebert P.D.N., Cywinska A., Ball S.L., Dewaard J.R. 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B: Biological Sciences 270: 313-321. https://doi.org/10.1098/rspb.2002.2218", "Ibanez C., Garcia-Mudarra J.L., Ruedi M., Stadelmann B., Juste J. 2006. The Iberian contribution to cryptic diversity in European bats. Acta Chiropterologica 8: 277-297. https:// doi.org/10.3161/1733-5329(2006)8[277:TICTCD]2.0.CO;2", "Juste J., Ibanez C., Munoz J., Trujillo D., Benda P., Karatas A., Ruedi M. 2004. Mitochondrial phylogeography of the longeared bats (Plecotus) in the Mediterranean Palaearctic and Atlantic Islands. Molecular Phylogenetics and Evolution 31: 1114-1126. https://doi.org/10.1016/j.ympev.2003.10.005", "Kanuch P., Hajkova P., Rehak Z., Bryja J. 2007. A rapid PCRbased test for species identification of two cryptic bats Pipistrellus pipistrellus and P. pygmaeus and its application on museum and dropping samples. Acta Chiropterologica 9: 277-282. https://doi. org/10.3161/1733-5329(2007)9[277:ARPTFS]2.0.CO;2", "Kiefer A., Veith M. 2002. A new species of long-eared bat from Europe (Chiroptera: Vespertilionidae). Myotis 39: 5-16. https://doi.org/10.3161/001.004.0202", "Kiefer A., Mayer F., Kosuch J., Helversen O.V., Veith M. 2002. Conflicting molecular phylogenies of European long-eared bats (Plecotus) can be explained by cryptic diversity. Molecular Phylogenetics and Evolution 25: 557-566. https://doi.org/10.1016/S1055-7903(02)00299-3", "Kuzjakin A. 1965. Otrjad Rukokrylyje. Ordo Chiroptera [pp. 79-116]. In: Bobrinskoj N., Kuznetsov B., Kuzjakin A. (ed.). Opredelitel mljekopitayushtshikh SSSR, Isd. Prosveshtshenije, Moscow.", "Lanza B. 2012. Mammalia V : Chiroptera. Calderini, Bologna, 786 pp.", "Linnaeus C. 1758. Systema naturae per regna tria naturae, secundum classes, ordines, genera, species cum characteribus, differentiis, synonymis, locis. Edition decima, reformata. Tomus I. Laurentii Salvii, Holmiae, ii + 824 pp.", "LPO 2014a. Oreillard gris. Plecotus austriacus (J.B. Fischer, 1829) (pp. 362-369). In: LPO (ed.). Les chauves-souris de Rhone-Alpes, LPO Rhone-Alpes, Lyon.", "LPO 2014b. Oreillards indetermines. Plecotus spp. (pp. 352- 353). In: LPO (ed). Les chauves-souris de Rhone-Alpes, LPO Rhone-Alpes, Lyon.", "Maddalena T., Moretti M. 1994. Identificazione biochimica e morfologica di due specie sorelle: Plecotus auritus e Plecotus austriacus (Chiroptera: Vespertilionidae). (Centro Svizzero di coordinamento per lo studio e la protezione dei pipistrelli; Ufficio Protezione Natura del Canton Ticino - Dipartimento del territorio).", "Mattei-Roesli M. 2010. Situazione del genere Plecotus (Chiroptera) nel Cantone Ticino (Svizzera). Bollettino della Societa ticinese di Scienze naturali 98: 31-34.", "Mayer F., Helversen V.O. 2001. Cryptic diversity in European bats. Proceedings of the Royal Society B: Biological Sciences 268: 1825-1832. https://doi.org/10.1098/rspb.2001.1744", "Middleton N., Froud A., French K. 2014. Social calls of the Bats of Britain and Ireland. Pelagic Publishing Ltd.", "Moretti M., Roesli M., Gamboni A.-S., Maddalena T. 2003. I pipistrelli del Cantone Ticino. Memorie della Societa ticinese di scienze naturali 6: 1-91.", "Mucedda M., Kiefer A., Pidinchedda E., Veith M. 2002. A new species of long-eared bat (Chiroptera: Vespertilionidae) from Sardinia (Italy). Acta Chiropterologica 4: 121-135. https://doi.org/10.3161/001.004.0202", "Palumbi S.R., Kewalo A.M., Romano S., Mcmillan W.O., Stice L., Grabowski G. 1991. The Simple Fool's Guide to PCR. University of Hawaii, Honolulu.", "Pavlinic I., Dakovic M. 2015. Identification of four Plecotus species (Chiroptera, Vespertilionidae) in Croatia based on cranial characters. Mammalia 80: 385-394. https://doi.org/10.1515/mammalia-2014-0031", "Preatoni D.G., Martinoli A., Zilio A., Penati F. 2000.Distribution and status of Bats (Mammalia, Chiroptera) in alpine and prealpine areas of Lombardy (Northern Italy). Il Naturalista Valtellinese 11.", "Preatoni D.G., Spada M., Wauters L.A., Tosi G., Martinoli A. 2011. Habitat use in the female Alpine long-eared bat (Plecotus macrobullaris): does breeding make the difference? Acta Chiropterologica 13: 355-364. https://doi.org/10.3161/150811011x624820", "R Core Team. 2017. R: A Language and Environment for Statistical Computing. Vienna, Austria.", "Razgour O., Clare E.L., Zeale M.R.K., Hanmer J., Schnell I.B., Rasmussen M., Gilbert T.P., Jones G. 2011. High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species. Ecology and Evolution 1: 556-570. https://doi.org/10.1002/ece3.49", "Razgour O., Juste J., Ibanez C., Kiefer A., Rebelo H., Puechmaille S.J., Arlettaz R., Burke T., Dawson D. A., Beaumont M., Jones G. 2013. The shaping of genetic variation in edge-of-range populations under past and future climate change. Ecology Letters 16: 1258-1266. https://doi.org/10.1111/ele.12158", "Rebelo H., Froufe E., Brito J.C., Russo D., Cistrone L., Ferrand N., Jones G. 2012. Postglacial colonization of Europe by the barbastelle bat: agreement between molecular data and past predictive modelling. Molecular Ecology 21: 2761- 2774. https://doi.org/10.1111/j.1365-294X.2012.05566.x", "Russo D., Jones G. 2002. Identification of twenty-two bat species (Mammalia: Chiroptera) from Italy by analysis of time-expanded recordings of echolocation calls. Journal of Zoology 258: 91-103. https://doi.org/10.1017/s0952836902001231", "Rutishauser M. D., Bontadina F., Braunisch V., Ashrafi S., Arlettaz R. 2012. The challenge posed by newly discovered cryptic species: disentangling the environmental niches of long-eared bats. Diversity and Distributions 18: 1107-1119. https://doi.org/10.1111/j.1472-4642.2012.00904.x", "Skiba R. 2003. Europaische Fledermause. Kennzeichen, Echoortung und Detektoranwendung. Bd. 648. Westrap Wissenschaften, Hohenwarsleben, Germany, 212 pp.", "Spitzenberger F. 2001. Die Saugetierfauna Osterreichs. 13. Bundesministerium fur land-und Forstwirtschaft Umwelt and Wasserwirtschaft, Gratz, Austria, 895 pp.", "Spitzenberger F., Haring E., Tvrtkovic N. 2002. Plecotus microdontus (Mammalia, Vespertilionidae), a new bat species from Austria. Natura Croatica 11: 1-18.", "Spitzenberger F., Strelkov P., Winkler H., Haring E. 2006. A preliminary revision of the genus Plecotus (Chiroptera, Vespertilionidae) based on genetic and morphological results. Zoologica Scripta 35: 187-230. https://doi.org/10.1111/j.1463-6409.2006.00224.x", "Thompson J.D., Higgins D.G., Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positionspecific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680. https://doi.org/10.1093/nar/22.22.4673", "Tvrtkovic N., Pavlinic I., Haring E. 2005. Four species of longeared bats (Plecotus, Geoffroy, 1818; Mammalia, Vespertilionidae) in Croatia: field identification and distribution. Folia Zoologica 54: 75-88.", "Wickham H. 2016. ggplot2: elegant graphics for data analysis. Springer International Publishing, 260 pp.", "Worthington-Wilmer J., Barratt E. 1996.A non-lethal method of tissue sampling for genetic studies of Chiropterans. Bat Research News 37: 1-3.", "Zeale M.R., Butlin R.K., Barker G.L., Lees D.C., Jones G. 2011. Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces. Molecular Ecology Resources 11: 236- 244. https://doi.org/10.1111/j.1755-0998.2010.02920.x"]}