R Population Genetic Functions ...
Functions for fast forward population genetic analyses in R. Most functions are based on genind-objects, which is the adegenet formal class (S4) for individual genotypes. Among others, it includes functions for: calculating summaries, e.g. number of alleles, allele distribution of single loci estima...
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Online Access: | https://dx.doi.org/10.5281/zenodo.1161368 https://zenodo.org/record/1161368 |
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ftdatacite:10.5281/zenodo.1161368 2023-06-11T04:17:15+02:00 R Population Genetic Functions ... Kruse, Stefan 2018 https://dx.doi.org/10.5281/zenodo.1161368 https://zenodo.org/record/1161368 unknown Zenodo https://github.com/StefanKruse/R_PopulationGenetics/tree/v1.00 https://github.com/StefanKruse/R_PopulationGenetics/tree/v1.00 https://dx.doi.org/10.5281/zenodo.1161369 Open Access info:eu-repo/semantics/openAccess Software SoftwareSourceCode article 2018 ftdatacite https://doi.org/10.5281/zenodo.116136810.5281/zenodo.1161369 2023-05-02T10:56:44Z Functions for fast forward population genetic analyses in R. Most functions are based on genind-objects, which is the adegenet formal class (S4) for individual genotypes. Among others, it includes functions for: calculating summaries, e.g. number of alleles, allele distribution of single loci estimating linkage disequilibrium reformatting genind-objects to formats required by other programs, e.g. BOTTLENECK, GENEPOP, FreeNA, ARLEQUIN, STRUCTURE, EEMS, SPAGEDI, TESS, CERVUS These functions were compiled/developed during the analyses of microsatellite data for the manuscript: "High gene flow and complex treeline dynamics of Larix Mill. stands on the Taymyr Peninsula (north-central Siberia) revealed by nuclear microsatellites" by Kruse, S., Epp, L. S., Wieczorek, M., Pestryakova, L. A., Stoof-Leichsenring, K. R., Herzschuh, U., accepted for publication in Tree Genetics & Genomes, doi:10.1007/s11295-018-1235-3 ... Article in Journal/Newspaper Taymyr Taymyr Peninsula Siberia DataCite Metadata Store (German National Library of Science and Technology) Taymyr ENVELOPE(89.987,89.987,68.219,68.219) |
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Open Polar |
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DataCite Metadata Store (German National Library of Science and Technology) |
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ftdatacite |
language |
unknown |
description |
Functions for fast forward population genetic analyses in R. Most functions are based on genind-objects, which is the adegenet formal class (S4) for individual genotypes. Among others, it includes functions for: calculating summaries, e.g. number of alleles, allele distribution of single loci estimating linkage disequilibrium reformatting genind-objects to formats required by other programs, e.g. BOTTLENECK, GENEPOP, FreeNA, ARLEQUIN, STRUCTURE, EEMS, SPAGEDI, TESS, CERVUS These functions were compiled/developed during the analyses of microsatellite data for the manuscript: "High gene flow and complex treeline dynamics of Larix Mill. stands on the Taymyr Peninsula (north-central Siberia) revealed by nuclear microsatellites" by Kruse, S., Epp, L. S., Wieczorek, M., Pestryakova, L. A., Stoof-Leichsenring, K. R., Herzschuh, U., accepted for publication in Tree Genetics & Genomes, doi:10.1007/s11295-018-1235-3 ... |
format |
Article in Journal/Newspaper |
author |
Kruse, Stefan |
spellingShingle |
Kruse, Stefan R Population Genetic Functions ... |
author_facet |
Kruse, Stefan |
author_sort |
Kruse, Stefan |
title |
R Population Genetic Functions ... |
title_short |
R Population Genetic Functions ... |
title_full |
R Population Genetic Functions ... |
title_fullStr |
R Population Genetic Functions ... |
title_full_unstemmed |
R Population Genetic Functions ... |
title_sort |
r population genetic functions ... |
publisher |
Zenodo |
publishDate |
2018 |
url |
https://dx.doi.org/10.5281/zenodo.1161368 https://zenodo.org/record/1161368 |
long_lat |
ENVELOPE(89.987,89.987,68.219,68.219) |
geographic |
Taymyr |
geographic_facet |
Taymyr |
genre |
Taymyr Taymyr Peninsula Siberia |
genre_facet |
Taymyr Taymyr Peninsula Siberia |
op_relation |
https://github.com/StefanKruse/R_PopulationGenetics/tree/v1.00 https://github.com/StefanKruse/R_PopulationGenetics/tree/v1.00 https://dx.doi.org/10.5281/zenodo.1161369 |
op_rights |
Open Access info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.5281/zenodo.116136810.5281/zenodo.1161369 |
_version_ |
1768376227153838080 |