Time series analysis (TSA) of human invasive listeriosis trends, 2008–2015 ...

• Main Authors: EFSA Panel On Biological Hazards BIOHAZ, Ricci, Antonia, Allende, Ana, Bolton, Declan, Chemaly, Marianne, Davies, Robert, Fernández Escámez, Pablo Salvador, Girones, Rosina, Herman, Lieve, Koutsoumanis, Konstantinos, Nørrung, Birgit, Robertson, Lucy, Ru, Giuseppe, Sanaa, Moez, Simmons, Marion, Skandamis, Panagiotis, Snary, Emma, Speybroeck, Niko, Ter Kuile, Benno, Threlfall, John, Wahlström, Helene, Takkinen, Johanna, Wagner, Martin, Arcella, Davide, Da Silva Felicio, Maria Teresa, Georgiadis, Marios, Messens, Winy, Lindqvist, Roland
• Format: Article in Journal/Newspaper
• Language: English
• Published: Zenodo 2018
• Subjects: Listeria monocytogenes; invasive listeriosis; invasive; risk assessment; time series analysis; aggregated; disaggregated; ready-to-eat foods; gender-age combinations; http//id.agrisemantics.org/gacs/C1470; http//id.agrisemantics.org/gacs/C21254; http//id.agrisemantics.org/gacs/C3027; http//id.agrisemantics.org/gacs/C19651; http//id.agrisemantics.org/gacs/C155; http//id.agrisemantics.org/gacs/C2711; http//id.agrisemantics.org/gacs/C6489; http//id.agrisemantics.org/gacs/C2594; http//id.agrisemantics.org/gacs/C16575; http//id.agrisemantics.org/gacs/C5567; http//id.agrisemantics.org/gacs/C420; Norway; Iceland
• Online Access: https://dx.doi.org/10.5281/zenodo.1117638; https://zenodo.org/record/1117638

The R codes were developed and applied by the EFSA Working Group on Listeria monocytogenes contamination of ready-to-eat foods during the preparatory work on the Scientific Opinion ‘ Listeria monocytogenes contamination of ready-to-eat foods and the risk for human health in the EU’ (see 10.2903/j.efsa.2018.5134). The codes were used to perform time-series analyses of the number of confirmed invasive listeriosis cases in the EU/EEA for the period 2008–2015. Data from The European Surveillance System – TESSy, provided by Austria, Belgium, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Iceland, Ireland, Italy, Latvia, Luxembourg, Malta, Netherlands, Norway, Poland, Romania, Slovakia, Slovenia, Spain, Sweden, United Kingdom, and released by ECDC. Two R codes are provided, one has been used for an analysis using the entire dataset of 14,002 confirmed cases (aggregated analysis) and another one has been used for the analysis using each time a subset of the population (14 ... : EU; CSV: [e-mail] ...