Dataset of origins of replication in circular prokaryotic chromosomes ...

• Main Author: van Meel, Zoya
• Format: Dataset
• Language: unknown
• Published: Zenodo 2024
• Subjects: Orca
• Online Access: https://dx.doi.org/10.5281/zenodo.10888581; https://zenodo.org/doi/10.5281/zenodo.10888581

This dataset includes two files downloaded from the DoriC 12.0 database [1] and one file with experimentally verified origins of replications (oriCs). The two DoriC files describe oriCs of circular chromosomes predicted with Ori-Finder on complete and chromosome level assemblies. The experimental_dataset file is a describes a set of experimentally verified oriCs, including accession numbers and and sources, collected via literature review. The oriC_number column is used in the case of bipartite origins. These files were used in the development of ORCA: https://github.com/ZoyavanMeel/ORCA. [1] Mei-Jing Dong, Hao Luo and Feng Gao, DoriC 12.0: an updated database of replication origins in both complete and draft prokaryotic genomes, Nucleic Acid Research, 2023, doi: 10.1093/nar/gkac964. ...