INTO THE BLUE: EVOLUTIONARY ADAPTATIONS ASSOCIATED WITH THE DIVERSIFICATION OF BALEEN WHALES ...

• Main Author: Genty, Gabrielle
• Format: Article in Journal/Newspaper
• Language: English
• Published: Zenodo 2024
• Subjects: cetacean; whole genome; evolutionary biology; genes; positive selection; PAML; baleen whales
• Online Access: https://dx.doi.org/10.5281/zenodo.10703298; https://zenodo.org/doi/10.5281/zenodo.10703298

Table S1. PAML results per species – Results for the branch-site tests for all the 10,159 cetartiodactyla orthologous genes on seventeen species separated per group; genes tested for each group (Mysticeti, Odontoceti and Land) are shown on a different sheet. Columns signify the following: the likelihood ratio test (LRT) used to compare different evolutionary models, specifically, LRT0 compares M2a vs M0, LRT1 compares M2a vs M2a1, and LRT2 compares M2a vs M2a_rel; w0 (ω Zero), representing the ratio of non-synonymous to synonymous substitutions (dN/dS) under the null model where the value for the lineage is constrained to be zero; wF (ω Foreground), indicating the dN/dS ratio for the foreground branch (the lineage of interest) where positive selection is hypothesized and the value can be greater than 1; wB (ω Background), showing the dN/dS ratio for the background branches (all other lineages in the phylogeny) with values ranging between 0 and 1; and Sig (Significance), which indicates whether the test ...