Drennan 2024 Doctoral Thesis Chapter 5 dataset - SNP catalogs ...

• Main Authors: Drennan, Regan, Taboada, Sergio, Glover, Adrian G, Dahlgren, Thomas G, Linse, Katrin, Copley, Jon, Arias, Maria Belen
• Format: Dataset
• Language: unknown
• Published: Zenodo 2024
• Subjects: Southern Ocean
• Online Access: https://dx.doi.org/10.5281/zenodo.10606641; https://zenodo.org/doi/10.5281/zenodo.10606641

This dataset supports the thesis entitled “Patterns of Diversity, Connectivity, and Evolution in Southern Ocean and Deep-Sea Annelids” by Regan Drennan AWARDED BY: University of Southampton DATE OF AWARD: 2024 DESCRIPTION OF THE DATA: Genomic data generated in thesis Chapter 5: Population genomics, cryptic diversity and phylogeographic structure in the Southern Ocean circumpolar annelid, Aglaophamus trissophyllus (Annelida: Nephtyidae) Single nucleotide polymorphism (SNP) genomic data was prepared and sequenced using a ddRADseq library preparation protocol (see Chapter 5 Results section 5.2.5 for more details). Following sequencing, filtering and locus assembly was carried out using Stacks v 2.64 https://catchenlab.life.illinois.edu/stacks/ - Stacks generates a catalog to determine which haplotype alleles are present at every locus in each individual. This dataset includes all catalogs analysed in thesis Chapter 5 following initial QC, processing, and quality filtering steps (see Chapter 5 Results section ...