Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ...
The harbour porpoise (Phocoena phocoena) is a highly mobile cetacean found across the Northern hemisphere. It occurs in coastal waters and inhabits basins that vary broadly in salinity, temperature, and food availability. These diverse habitats could drive subtle differentiation among populations, b...
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Online Access: | https://dx.doi.org/10.5061/dryad.vr021gq https://datadryad.org/stash/dataset/doi:10.5061/dryad.vr021gq |
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ftdatacite:10.5061/dryad.vr021gq 2024-06-09T07:46:32+00:00 Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... Autenrieth, Marijke Hartmann, Stefanie Lah, Ljerka Roos, Anna Dennis, Alice B. Tiedemann, Ralph 2018 https://dx.doi.org/10.5061/dryad.vr021gq https://datadryad.org/stash/dataset/doi:10.5061/dryad.vr021gq en eng Dryad https://dx.doi.org/10.1111/1755-0998.12932 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 annotation whole genome Phocoena phocoena Dataset dataset 2018 ftdatacite https://doi.org/10.5061/dryad.vr021gq10.1111/1755-0998.12932 2024-05-13T10:58:15Z The harbour porpoise (Phocoena phocoena) is a highly mobile cetacean found across the Northern hemisphere. It occurs in coastal waters and inhabits basins that vary broadly in salinity, temperature, and food availability. These diverse habitats could drive subtle differentiation among populations, but examination of this would be best conducted with a robust reference genome. Here we report the first harbour porpoise genome, assembled de novo from an individual originating in the Kattegat Sea (Sweden). The genome is one of the most complete cetacean genomes currently available, with a total size of 2.39 Gb and 50% of the total length found in just 34 scaffolds. Using just 122 of the longest scaffolds, we were able to show high levels of synteny with the genome of the domestic cattle (Bos taurus). Our draft annotation comprises 22,154 predicted genes, which we further annotated through matches to the NCBI nucleotide database, GO categorization, and motif prediction. Within the predicted genes we have ... : Autenrieth-MER-Pp_genome_annotationone annotation file for the harbour porpoise (phocoena phocoena) genome generated by the MAKER2 annotation. Format: gff Annotation statistics are given in the README ... Dataset Harbour porpoise Phocoena phocoena DataCite Metadata Store (German National Library of Science and Technology) Kattegat ENVELOPE(9.692,9.692,63.563,63.563) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
annotation whole genome Phocoena phocoena |
spellingShingle |
annotation whole genome Phocoena phocoena Autenrieth, Marijke Hartmann, Stefanie Lah, Ljerka Roos, Anna Dennis, Alice B. Tiedemann, Ralph Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
topic_facet |
annotation whole genome Phocoena phocoena |
description |
The harbour porpoise (Phocoena phocoena) is a highly mobile cetacean found across the Northern hemisphere. It occurs in coastal waters and inhabits basins that vary broadly in salinity, temperature, and food availability. These diverse habitats could drive subtle differentiation among populations, but examination of this would be best conducted with a robust reference genome. Here we report the first harbour porpoise genome, assembled de novo from an individual originating in the Kattegat Sea (Sweden). The genome is one of the most complete cetacean genomes currently available, with a total size of 2.39 Gb and 50% of the total length found in just 34 scaffolds. Using just 122 of the longest scaffolds, we were able to show high levels of synteny with the genome of the domestic cattle (Bos taurus). Our draft annotation comprises 22,154 predicted genes, which we further annotated through matches to the NCBI nucleotide database, GO categorization, and motif prediction. Within the predicted genes we have ... : Autenrieth-MER-Pp_genome_annotationone annotation file for the harbour porpoise (phocoena phocoena) genome generated by the MAKER2 annotation. Format: gff Annotation statistics are given in the README ... |
format |
Dataset |
author |
Autenrieth, Marijke Hartmann, Stefanie Lah, Ljerka Roos, Anna Dennis, Alice B. Tiedemann, Ralph |
author_facet |
Autenrieth, Marijke Hartmann, Stefanie Lah, Ljerka Roos, Anna Dennis, Alice B. Tiedemann, Ralph |
author_sort |
Autenrieth, Marijke |
title |
Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
title_short |
Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
title_full |
Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
title_fullStr |
Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
title_full_unstemmed |
Data from: High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) ... |
title_sort |
data from: high quality whole genome sequence of an abundant holarctic odontocete, the harbour porpoise (phocoena phocoena) ... |
publisher |
Dryad |
publishDate |
2018 |
url |
https://dx.doi.org/10.5061/dryad.vr021gq https://datadryad.org/stash/dataset/doi:10.5061/dryad.vr021gq |
long_lat |
ENVELOPE(9.692,9.692,63.563,63.563) |
geographic |
Kattegat |
geographic_facet |
Kattegat |
genre |
Harbour porpoise Phocoena phocoena |
genre_facet |
Harbour porpoise Phocoena phocoena |
op_relation |
https://dx.doi.org/10.1111/1755-0998.12932 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.vr021gq10.1111/1755-0998.12932 |
_version_ |
1801376461243809792 |