Stacks and Genepop files

Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and t...

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Bibliographic Details
Main Authors: Buonaccorsi, Vince P., Malloy, Jacob, Peterson, Mark, Brubaker, Kristen, Grant, Chris J.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
Population genomics
salmonid
Pennsylvania
USA
Salvelinus fontinalis
Atlantic salmon
Online Access:https://dx.doi.org/10.5061/dryad.vk405/1
http://datadryad.org/resource/doi:10.5061/dryad.vk405/1
id ftdatacite:10.5061/dryad.vk405/1
record_format openpolar
spelling ftdatacite:10.5061/dryad.vk405/1 2023-05-15T15:31:02+02:00 Stacks and Genepop files Buonaccorsi, Vince P. Malloy, Jacob Peterson, Mark Brubaker, Kristen Grant, Chris J. 2017 https://dx.doi.org/10.5061/dryad.vk405/1 http://datadryad.org/resource/doi:10.5061/dryad.vk405/1 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.vk405 http://creativecommons.org/publicdomain/zero/1.0 CC0 Population genomics salmonid Pennsylvania USA Salvelinus fontinalis dataset Dataset DataFile 2017 ftdatacite https://doi.org/10.5061/dryad.vk405/1 https://doi.org/10.5061/dryad.vk405 2021-11-05T12:55:41Z Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool. Dataset Atlantic salmon DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Population genomics
salmonid
Pennsylvania
USA
Salvelinus fontinalis
spellingShingle Population genomics
salmonid
Pennsylvania
USA
Salvelinus fontinalis
Buonaccorsi, Vince P.
Malloy, Jacob
Peterson, Mark
Brubaker, Kristen
Grant, Chris J.
Stacks and Genepop files
topic_facet Population genomics
salmonid
Pennsylvania
USA
Salvelinus fontinalis
description Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool.
format Dataset
author Buonaccorsi, Vince P.
Malloy, Jacob
Peterson, Mark
Brubaker, Kristen
Grant, Chris J.
author_facet Buonaccorsi, Vince P.
Malloy, Jacob
Peterson, Mark
Brubaker, Kristen
Grant, Chris J.
author_sort Buonaccorsi, Vince P.
title Stacks and Genepop files
title_short Stacks and Genepop files
title_full Stacks and Genepop files
title_fullStr Stacks and Genepop files
title_full_unstemmed Stacks and Genepop files
title_sort stacks and genepop files
publisher Dryad Digital Repository
publishDate 2017
url https://dx.doi.org/10.5061/dryad.vk405/1
http://datadryad.org/resource/doi:10.5061/dryad.vk405/1
genre Atlantic salmon
genre_facet Atlantic salmon
op_relation https://dx.doi.org/10.5061/dryad.vk405
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.vk405/1
https://doi.org/10.5061/dryad.vk405
_version_ 1766361520601563136

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