Stacks and Genepop files

Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and t...

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Bibliographic Details
Main Authors: Buonaccorsi, Vince P., Malloy, Jacob, Peterson, Mark, Brubaker, Kristen, Grant, Chris J.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
Population genomics
salmonid
Pennsylvania
USA
Salvelinus fontinalis
Atlantic salmon
Online Access:https://dx.doi.org/10.5061/dryad.vk405/1
http://datadryad.org/resource/doi:10.5061/dryad.vk405/1
Description
Summary:Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool.

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