Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ...
Dogs were the first domesticated species, originating at least 15,000 y ago from Eurasian gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly 400 pure breeds and a far more populous group of free-ranging animals adapted to a human commensal lifestyle (village...
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Dryad
2016
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Online Access: | https://dx.doi.org/10.5061/dryad.v9t5h https://datadryad.org/stash/dataset/doi:10.5061/dryad.v9t5h |
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ftdatacite:10.5061/dryad.v9t5h 2024-06-09T07:45:17+00:00 Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... Shannon, Laura M. Boyko, Ryan H. Castelhano, Marta Corey, Elizabeth Hayward, Jessica J. McLean, Corin White, Michelle E. Abi Said, Mounir Anita, Baddley A. Bondjengo Ikombe, Nono Calero, Jorge Galov, Ana Hedimbi, Marius Imam, Bulu Khalap, Rajashree Lally, Douglas Masta, Andrew Oliveira, Kyle C. Pérez, Lucía Randall, Julia Tam, Nguyen Minh Trujillo-Cornejo, Francisco J. Valeriano, Carlos Sutter, Nathan B. Todhunter, Rory J. Bustamante, Carlos D. Boyko, Adam R. 2016 https://dx.doi.org/10.5061/dryad.v9t5h https://datadryad.org/stash/dataset/doi:10.5061/dryad.v9t5h en eng Dryad https://dx.doi.org/10.1073/pnas.1516215112 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 village dogs Canis lupus domesticus haplotype diversity Canis lupus Dataset dataset 2016 ftdatacite https://doi.org/10.5061/dryad.v9t5h10.1073/pnas.1516215112 2024-05-13T10:59:08Z Dogs were the first domesticated species, originating at least 15,000 y ago from Eurasian gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly 400 pure breeds and a far more populous group of free-ranging animals adapted to a human commensal lifestyle (village dogs). Village dogs are more genetically diverse and geographically widespread than purebred dogs making them vital for unraveling dog population history. Using a semicustom 185,805-marker genotyping array, we conducted a large-scale survey of autosomal, mitochondrial, and Y chromosome diversity in 4,676 purebred dogs from 161 breeds and 549 village dogs from 38 countries. Geographic structure shows both isolation and gene flow have shaped genetic diversity in village dog populations. Some populations (notably those in the Neotropics and the South Pacific) are almost completely derived from European stock, whereas others are clearly admixed between indigenous and European dogs. Importantly, many ... : Genotype file for Canine HD semi custom array (bed)ShannonBoyko_All.bedMarker file for Canine HD semi custom array (bim)ShannonBoyko_All.bimSample file for Canine HD semi custom array (fam)ShannonBoyko_All.nopheno.famIdentification for individuals genotyped on the Canine HD semi custom arrayShannonBoyko_All.nopheno.txtGenotype file for merged Illumina and Affymetrix array data (bed)ShannonBoyko_Merged.bedMarker file for merged Illumina and Affymetrix array data (bim)ShannonBoyko_Merged.bimSample file for merged Illumina and Affymetrix array data (fam)ShannonBoyko_Merged.famIdentification for individuals included in merged Illumina and Affymetrix dataShannonBoyko_Merged.indMt Marker locationsShannonBoyko_Mt.mapGenotypes for Mt haplotypesShannonBoyko_MtHaplotypeGenotypesMt haplotype calls for indvidualsShannonBoyko_MtHaplotypesY marker locationsShannonBoyko_Y.mapGenotypes for Y haplotypesShannonBoyko_YHaplotypeGenotypes.pedY haplotype calls for indvidualsShannonBoyko_YHaplotypes ... Dataset Canis lupus DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
village dogs Canis lupus domesticus haplotype diversity Canis lupus |
spellingShingle |
village dogs Canis lupus domesticus haplotype diversity Canis lupus Shannon, Laura M. Boyko, Ryan H. Castelhano, Marta Corey, Elizabeth Hayward, Jessica J. McLean, Corin White, Michelle E. Abi Said, Mounir Anita, Baddley A. Bondjengo Ikombe, Nono Calero, Jorge Galov, Ana Hedimbi, Marius Imam, Bulu Khalap, Rajashree Lally, Douglas Masta, Andrew Oliveira, Kyle C. Pérez, Lucía Randall, Julia Tam, Nguyen Minh Trujillo-Cornejo, Francisco J. Valeriano, Carlos Sutter, Nathan B. Todhunter, Rory J. Bustamante, Carlos D. Boyko, Adam R. Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
topic_facet |
village dogs Canis lupus domesticus haplotype diversity Canis lupus |
description |
Dogs were the first domesticated species, originating at least 15,000 y ago from Eurasian gray wolves. Dogs today consist primarily of two specialized groups—a diverse set of nearly 400 pure breeds and a far more populous group of free-ranging animals adapted to a human commensal lifestyle (village dogs). Village dogs are more genetically diverse and geographically widespread than purebred dogs making them vital for unraveling dog population history. Using a semicustom 185,805-marker genotyping array, we conducted a large-scale survey of autosomal, mitochondrial, and Y chromosome diversity in 4,676 purebred dogs from 161 breeds and 549 village dogs from 38 countries. Geographic structure shows both isolation and gene flow have shaped genetic diversity in village dog populations. Some populations (notably those in the Neotropics and the South Pacific) are almost completely derived from European stock, whereas others are clearly admixed between indigenous and European dogs. Importantly, many ... : Genotype file for Canine HD semi custom array (bed)ShannonBoyko_All.bedMarker file for Canine HD semi custom array (bim)ShannonBoyko_All.bimSample file for Canine HD semi custom array (fam)ShannonBoyko_All.nopheno.famIdentification for individuals genotyped on the Canine HD semi custom arrayShannonBoyko_All.nopheno.txtGenotype file for merged Illumina and Affymetrix array data (bed)ShannonBoyko_Merged.bedMarker file for merged Illumina and Affymetrix array data (bim)ShannonBoyko_Merged.bimSample file for merged Illumina and Affymetrix array data (fam)ShannonBoyko_Merged.famIdentification for individuals included in merged Illumina and Affymetrix dataShannonBoyko_Merged.indMt Marker locationsShannonBoyko_Mt.mapGenotypes for Mt haplotypesShannonBoyko_MtHaplotypeGenotypesMt haplotype calls for indvidualsShannonBoyko_MtHaplotypesY marker locationsShannonBoyko_Y.mapGenotypes for Y haplotypesShannonBoyko_YHaplotypeGenotypes.pedY haplotype calls for indvidualsShannonBoyko_YHaplotypes ... |
format |
Dataset |
author |
Shannon, Laura M. Boyko, Ryan H. Castelhano, Marta Corey, Elizabeth Hayward, Jessica J. McLean, Corin White, Michelle E. Abi Said, Mounir Anita, Baddley A. Bondjengo Ikombe, Nono Calero, Jorge Galov, Ana Hedimbi, Marius Imam, Bulu Khalap, Rajashree Lally, Douglas Masta, Andrew Oliveira, Kyle C. Pérez, Lucía Randall, Julia Tam, Nguyen Minh Trujillo-Cornejo, Francisco J. Valeriano, Carlos Sutter, Nathan B. Todhunter, Rory J. Bustamante, Carlos D. Boyko, Adam R. |
author_facet |
Shannon, Laura M. Boyko, Ryan H. Castelhano, Marta Corey, Elizabeth Hayward, Jessica J. McLean, Corin White, Michelle E. Abi Said, Mounir Anita, Baddley A. Bondjengo Ikombe, Nono Calero, Jorge Galov, Ana Hedimbi, Marius Imam, Bulu Khalap, Rajashree Lally, Douglas Masta, Andrew Oliveira, Kyle C. Pérez, Lucía Randall, Julia Tam, Nguyen Minh Trujillo-Cornejo, Francisco J. Valeriano, Carlos Sutter, Nathan B. Todhunter, Rory J. Bustamante, Carlos D. Boyko, Adam R. |
author_sort |
Shannon, Laura M. |
title |
Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
title_short |
Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
title_full |
Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
title_fullStr |
Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
title_full_unstemmed |
Data from: Genetic structure in village dogs reveals a Central Asian domestication origin ... |
title_sort |
data from: genetic structure in village dogs reveals a central asian domestication origin ... |
publisher |
Dryad |
publishDate |
2016 |
url |
https://dx.doi.org/10.5061/dryad.v9t5h https://datadryad.org/stash/dataset/doi:10.5061/dryad.v9t5h |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Canis lupus |
genre_facet |
Canis lupus |
op_relation |
https://dx.doi.org/10.1073/pnas.1516215112 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.v9t5h10.1073/pnas.1516215112 |
_version_ |
1801374565306204160 |