Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ...
New sequencing technologies allow development of genome-wide markers for any genus of ecological interest, including plant genera such as Betula (birch) that have previously proved difficult to study due to widespread polyploidy and hybridisation. We present a de novo reference genome sequence assem...
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Online Access: | https://dx.doi.org/10.5061/dryad.v5gd2 https://datadryad.org/stash/dataset/doi:10.5061/dryad.v5gd2 |
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ftdatacite:10.5061/dryad.v5gd2 2024-02-04T09:58:16+01:00 Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... Wang, Nian Thomson, Marian Bodles, William J. A. Crawford, Robert M. M. Hunt, Harriet V. Watson Featherstone, Alan Pellicer, Jaume Buggs, Richard J. A. 2012 https://dx.doi.org/10.5061/dryad.v5gd2 https://datadryad.org/stash/dataset/doi:10.5061/dryad.v5gd2 en eng Dryad https://dx.doi.org/10.1111/mec.12131 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Genomics/Proteomics Betula nana Betula pubescens present Dataset dataset 2012 ftdatacite https://doi.org/10.5061/dryad.v5gd210.1111/mec.12131 2024-01-05T04:51:50Z New sequencing technologies allow development of genome-wide markers for any genus of ecological interest, including plant genera such as Betula (birch) that have previously proved difficult to study due to widespread polyploidy and hybridisation. We present a de novo reference genome sequence assembly, from 67X short read coverage, of Betula nana (dwarf birch) – a diploid that is the keystone woody species of sub-arctic scrub communities but of conservation concern in Britain. We also present 100bp PstI RAD markers for B. nana and closely related Betula tree species. Assembly of RAD markers in 15 individuals by alignment to the reference B. nana genome yielded 44k-86k RAD loci per individual, whereas de novo RAD assembly yielded 64k-121k loci per individual. Of the loci assembled by the de novo method, 3k homologous loci were found in all 15 individuals studied, and 35k in 10 or more individuals. Matching of RAD loci to RAD locus catalogs from the B. nana individual used for the reference genome, showed ... : Diagram-of-bioinformatic-pipelinesbowtie-sstacks-MatchesTo097Catalogbowtie-cstacks-IndividualCatalogsdenovo-sstacks-MatchesToUniversalCatalogsdenovo-sstacks-MatchesTo097Catalogsdenovo-ustacks-cstacks-IndividualAndUniversalCatalogsBetulaNana1.0Betula nana genome assembly 1.0 ... Dataset Arctic Betula nana Dwarf birch DataCite Metadata Store (German National Library of Science and Technology) Arctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Genomics/Proteomics Betula nana Betula pubescens present |
spellingShingle |
Genomics/Proteomics Betula nana Betula pubescens present Wang, Nian Thomson, Marian Bodles, William J. A. Crawford, Robert M. M. Hunt, Harriet V. Watson Featherstone, Alan Pellicer, Jaume Buggs, Richard J. A. Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
topic_facet |
Genomics/Proteomics Betula nana Betula pubescens present |
description |
New sequencing technologies allow development of genome-wide markers for any genus of ecological interest, including plant genera such as Betula (birch) that have previously proved difficult to study due to widespread polyploidy and hybridisation. We present a de novo reference genome sequence assembly, from 67X short read coverage, of Betula nana (dwarf birch) – a diploid that is the keystone woody species of sub-arctic scrub communities but of conservation concern in Britain. We also present 100bp PstI RAD markers for B. nana and closely related Betula tree species. Assembly of RAD markers in 15 individuals by alignment to the reference B. nana genome yielded 44k-86k RAD loci per individual, whereas de novo RAD assembly yielded 64k-121k loci per individual. Of the loci assembled by the de novo method, 3k homologous loci were found in all 15 individuals studied, and 35k in 10 or more individuals. Matching of RAD loci to RAD locus catalogs from the B. nana individual used for the reference genome, showed ... : Diagram-of-bioinformatic-pipelinesbowtie-sstacks-MatchesTo097Catalogbowtie-cstacks-IndividualCatalogsdenovo-sstacks-MatchesToUniversalCatalogsdenovo-sstacks-MatchesTo097Catalogsdenovo-ustacks-cstacks-IndividualAndUniversalCatalogsBetulaNana1.0Betula nana genome assembly 1.0 ... |
format |
Dataset |
author |
Wang, Nian Thomson, Marian Bodles, William J. A. Crawford, Robert M. M. Hunt, Harriet V. Watson Featherstone, Alan Pellicer, Jaume Buggs, Richard J. A. |
author_facet |
Wang, Nian Thomson, Marian Bodles, William J. A. Crawford, Robert M. M. Hunt, Harriet V. Watson Featherstone, Alan Pellicer, Jaume Buggs, Richard J. A. |
author_sort |
Wang, Nian |
title |
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
title_short |
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
title_full |
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
title_fullStr |
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
title_full_unstemmed |
Data from: Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers ... |
title_sort |
data from: genome sequence of dwarf birch (betula nana) and cross-species rad markers ... |
publisher |
Dryad |
publishDate |
2012 |
url |
https://dx.doi.org/10.5061/dryad.v5gd2 https://datadryad.org/stash/dataset/doi:10.5061/dryad.v5gd2 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Betula nana Dwarf birch |
genre_facet |
Arctic Betula nana Dwarf birch |
op_relation |
https://dx.doi.org/10.1111/mec.12131 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.v5gd210.1111/mec.12131 |
_version_ |
1789962687647580160 |