Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ...
Phenotypic plasticity is expected to facilitate the persistence of natural populations as global change progresses. The attributes of fluctuating environments that favor the evolution of plasticity have received extensive theoretical investigation, yet empirical validation of these findings is still...
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Online Access: | https://dx.doi.org/10.5061/dryad.tqjq2bvxc https://datadryad.org/stash/dataset/doi:10.5061/dryad.tqjq2bvxc |
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ftdatacite:10.5061/dryad.tqjq2bvxc 2024-02-04T10:03:35+01:00 Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... Bitter, Mark Kapsenberg, Lydia Silliman, Katherine Gattuso, Jean-Pierre Pfister, Catherine 2020 https://dx.doi.org/10.5061/dryad.tqjq2bvxc https://datadryad.org/stash/dataset/doi:10.5061/dryad.tqjq2bvxc en eng Dryad https://github.com/z0on/tag-based_RNAseq https://dx.doi.org/10.1186/s12864-015-1817-5 https://dx.doi.org/10.1186/s13059-014-0550-8 https://github.com/z0on/tag-based_RNAseq Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Mussels population transcriptomics Dataset dataset 2020 ftdatacite https://doi.org/10.5061/dryad.tqjq2bvxc10.1186/s12864-015-1817-510.1186/s13059-014-0550-8 2024-01-05T01:14:15Z Phenotypic plasticity is expected to facilitate the persistence of natural populations as global change progresses. The attributes of fluctuating environments that favor the evolution of plasticity have received extensive theoretical investigation, yet empirical validation of these findings is still in its infancy. Here, we combine high-resolution environmental data with a laboratory-based experiment to explore the influence of habitat pH fluctuation dynamics on the plasticity of gene expression in two populations of the Mediterranean mussel, Mytilus galloprovincialis. We linked differences in the magnitude and predictability of pH fluctuations in two habitats to population-specific gene expression profiles in ambient and stressful pH treatments. The results presented demonstrate population-based differentiation in gene expression plasticity, whereby mussels native to a habitat exhibiting a large magnitude of pH fluctuations with low predictability display reduced phenotypic plasticity between experimentally ... : For a full description of the methods, please see the associated manuscript for this Dryad submission. Breifly, one year of high-frequency pH and temperature monitoring was conducted at a coastal and lagoon habitat in the Northwest Mediterranean Sea (the Bay of Villefranche: 43.682oN, 7.319o E and Thau Lagoon: 43.4158oN, 3.6888oE). Resident mussels at each site were collected and reared in labortory common garden conditions for six weeks, after which a 5 day acclimation to two pH treatments (benign pH - 8.1; stressful pH - 7.75) was conducted. At the end of the acclimation peirod, total RNA was extracted from gill tissue samples, and gene expression profiling was carried out using 3’ mRNA sequencing. All resulting raw and processed data files are included here. ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Mussels population transcriptomics |
spellingShingle |
Mussels population transcriptomics Bitter, Mark Kapsenberg, Lydia Silliman, Katherine Gattuso, Jean-Pierre Pfister, Catherine Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
topic_facet |
Mussels population transcriptomics |
description |
Phenotypic plasticity is expected to facilitate the persistence of natural populations as global change progresses. The attributes of fluctuating environments that favor the evolution of plasticity have received extensive theoretical investigation, yet empirical validation of these findings is still in its infancy. Here, we combine high-resolution environmental data with a laboratory-based experiment to explore the influence of habitat pH fluctuation dynamics on the plasticity of gene expression in two populations of the Mediterranean mussel, Mytilus galloprovincialis. We linked differences in the magnitude and predictability of pH fluctuations in two habitats to population-specific gene expression profiles in ambient and stressful pH treatments. The results presented demonstrate population-based differentiation in gene expression plasticity, whereby mussels native to a habitat exhibiting a large magnitude of pH fluctuations with low predictability display reduced phenotypic plasticity between experimentally ... : For a full description of the methods, please see the associated manuscript for this Dryad submission. Breifly, one year of high-frequency pH and temperature monitoring was conducted at a coastal and lagoon habitat in the Northwest Mediterranean Sea (the Bay of Villefranche: 43.682oN, 7.319o E and Thau Lagoon: 43.4158oN, 3.6888oE). Resident mussels at each site were collected and reared in labortory common garden conditions for six weeks, after which a 5 day acclimation to two pH treatments (benign pH - 8.1; stressful pH - 7.75) was conducted. At the end of the acclimation peirod, total RNA was extracted from gill tissue samples, and gene expression profiling was carried out using 3’ mRNA sequencing. All resulting raw and processed data files are included here. ... |
format |
Dataset |
author |
Bitter, Mark Kapsenberg, Lydia Silliman, Katherine Gattuso, Jean-Pierre Pfister, Catherine |
author_facet |
Bitter, Mark Kapsenberg, Lydia Silliman, Katherine Gattuso, Jean-Pierre Pfister, Catherine |
author_sort |
Bitter, Mark |
title |
Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
title_short |
Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
title_full |
Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
title_fullStr |
Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
title_full_unstemmed |
Magnitude and predictability of pH fluctuations shape plastic responses to ocean acidification ... |
title_sort |
magnitude and predictability of ph fluctuations shape plastic responses to ocean acidification ... |
publisher |
Dryad |
publishDate |
2020 |
url |
https://dx.doi.org/10.5061/dryad.tqjq2bvxc https://datadryad.org/stash/dataset/doi:10.5061/dryad.tqjq2bvxc |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://github.com/z0on/tag-based_RNAseq https://dx.doi.org/10.1186/s12864-015-1817-5 https://dx.doi.org/10.1186/s13059-014-0550-8 https://github.com/z0on/tag-based_RNAseq |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.tqjq2bvxc10.1186/s12864-015-1817-510.1186/s13059-014-0550-8 |
_version_ |
1789971071089246208 |