Data from: Genome sequencing highlights the dynamic early history of dogs ...
To identify genetic changes underlying dog domestication and reconstruct their early evolutionary history, we generated high-quality genome sequences from three gray wolves, one from each of the three putative centers of dog domestication, two basal dog lineages (Basenji and Dingo) and a golden jack...
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Online Access: | https://dx.doi.org/10.5061/dryad.sk3p7 https://datadryad.org/stash/dataset/doi:10.5061/dryad.sk3p7 |
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ftdatacite:10.5061/dryad.sk3p7 2024-02-04T09:59:28+01:00 Data from: Genome sequencing highlights the dynamic early history of dogs ... Freedman, Adam H. Gronau, Ilan Schweizer, Rena M. Ortega-Del Vecchyo, Diego Han, Eunjung Silva, Pedro M. Galaverni, Marco Fan, Zhenxin Marx, Peter Lorente-Galdos, Belen Beale, Holly Ramirez, Oscar Hormozdiari, Farhad Alkan, Can Vilà, Carles Squire, Kevin Geffen, Eli Kusak, Josip Boyko, Adam R. Parker, Heidi G. Lee, Clarence Tadigotla, Vasisht Siepel, Adam Bustamante, Carlos D. Harkins, Timothy T. Nelson, Stanley F. Ostrander, Elaine A. Marques-Bonet, Tomas Wayne, Robert K. Novembre, John 2016 https://dx.doi.org/10.5061/dryad.sk3p7 https://datadryad.org/stash/dataset/doi:10.5061/dryad.sk3p7 en eng Dryad https://dx.doi.org/10.1371/journal.pgen.1004016 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Canis lupus familiaris dog domestication Genome sequencing Canis aureus Canis lupus Dataset dataset 2016 ftdatacite https://doi.org/10.5061/dryad.sk3p710.1371/journal.pgen.1004016 2024-01-05T01:14:15Z To identify genetic changes underlying dog domestication and reconstruct their early evolutionary history, we generated high-quality genome sequences from three gray wolves, one from each of the three putative centers of dog domestication, two basal dog lineages (Basenji and Dingo) and a golden jackal as an outgroup. Analysis of these sequences supports a demographic model in which dogs and wolves diverged through a dynamic process involving population bottlenecks in both lineages and post-divergence gene flow. In dogs, the domestication bottleneck involved at least a 16-fold reduction in population size, a much more severe bottleneck than estimated previously. A sharp bottleneck in wolves occurred soon after their divergence from dogs, implying that the pool of diversity from which dogs arose was substantially larger than represented by modern wolf populations. We narrow the plausible range for the date of initial dog domestication to an interval spanning 11–16 thousand years ago, predating the rise of ... : freedman_2014_plosgenetics_vcffilesIncluded in the tarball are merged vcf files, for individual autosomes, for the 6 canid genomes sequenced for and described in "Genome Sequencing Highlights the Dynamic Early History of Dogs", Freedman et al, PLoS Genetics 2014. Those are: Chinese wolf, Israeli wolf, Croatian wolf, Golden jackal, Dingo and Basenji.These files have been converted to boxer reference genome CanFam 3.1 coordinates (the original paper was in v. 3.0 coordinates). See Freedman et al. 2014 for a detailed description of filters. ... Dataset Canis lupus DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Canis lupus familiaris dog domestication Genome sequencing Canis aureus Canis lupus |
spellingShingle |
Canis lupus familiaris dog domestication Genome sequencing Canis aureus Canis lupus Freedman, Adam H. Gronau, Ilan Schweizer, Rena M. Ortega-Del Vecchyo, Diego Han, Eunjung Silva, Pedro M. Galaverni, Marco Fan, Zhenxin Marx, Peter Lorente-Galdos, Belen Beale, Holly Ramirez, Oscar Hormozdiari, Farhad Alkan, Can Vilà, Carles Squire, Kevin Geffen, Eli Kusak, Josip Boyko, Adam R. Parker, Heidi G. Lee, Clarence Tadigotla, Vasisht Siepel, Adam Bustamante, Carlos D. Harkins, Timothy T. Nelson, Stanley F. Ostrander, Elaine A. Marques-Bonet, Tomas Wayne, Robert K. Novembre, John Data from: Genome sequencing highlights the dynamic early history of dogs ... |
topic_facet |
Canis lupus familiaris dog domestication Genome sequencing Canis aureus Canis lupus |
description |
To identify genetic changes underlying dog domestication and reconstruct their early evolutionary history, we generated high-quality genome sequences from three gray wolves, one from each of the three putative centers of dog domestication, two basal dog lineages (Basenji and Dingo) and a golden jackal as an outgroup. Analysis of these sequences supports a demographic model in which dogs and wolves diverged through a dynamic process involving population bottlenecks in both lineages and post-divergence gene flow. In dogs, the domestication bottleneck involved at least a 16-fold reduction in population size, a much more severe bottleneck than estimated previously. A sharp bottleneck in wolves occurred soon after their divergence from dogs, implying that the pool of diversity from which dogs arose was substantially larger than represented by modern wolf populations. We narrow the plausible range for the date of initial dog domestication to an interval spanning 11–16 thousand years ago, predating the rise of ... : freedman_2014_plosgenetics_vcffilesIncluded in the tarball are merged vcf files, for individual autosomes, for the 6 canid genomes sequenced for and described in "Genome Sequencing Highlights the Dynamic Early History of Dogs", Freedman et al, PLoS Genetics 2014. Those are: Chinese wolf, Israeli wolf, Croatian wolf, Golden jackal, Dingo and Basenji.These files have been converted to boxer reference genome CanFam 3.1 coordinates (the original paper was in v. 3.0 coordinates). See Freedman et al. 2014 for a detailed description of filters. ... |
format |
Dataset |
author |
Freedman, Adam H. Gronau, Ilan Schweizer, Rena M. Ortega-Del Vecchyo, Diego Han, Eunjung Silva, Pedro M. Galaverni, Marco Fan, Zhenxin Marx, Peter Lorente-Galdos, Belen Beale, Holly Ramirez, Oscar Hormozdiari, Farhad Alkan, Can Vilà, Carles Squire, Kevin Geffen, Eli Kusak, Josip Boyko, Adam R. Parker, Heidi G. Lee, Clarence Tadigotla, Vasisht Siepel, Adam Bustamante, Carlos D. Harkins, Timothy T. Nelson, Stanley F. Ostrander, Elaine A. Marques-Bonet, Tomas Wayne, Robert K. Novembre, John |
author_facet |
Freedman, Adam H. Gronau, Ilan Schweizer, Rena M. Ortega-Del Vecchyo, Diego Han, Eunjung Silva, Pedro M. Galaverni, Marco Fan, Zhenxin Marx, Peter Lorente-Galdos, Belen Beale, Holly Ramirez, Oscar Hormozdiari, Farhad Alkan, Can Vilà, Carles Squire, Kevin Geffen, Eli Kusak, Josip Boyko, Adam R. Parker, Heidi G. Lee, Clarence Tadigotla, Vasisht Siepel, Adam Bustamante, Carlos D. Harkins, Timothy T. Nelson, Stanley F. Ostrander, Elaine A. Marques-Bonet, Tomas Wayne, Robert K. Novembre, John |
author_sort |
Freedman, Adam H. |
title |
Data from: Genome sequencing highlights the dynamic early history of dogs ... |
title_short |
Data from: Genome sequencing highlights the dynamic early history of dogs ... |
title_full |
Data from: Genome sequencing highlights the dynamic early history of dogs ... |
title_fullStr |
Data from: Genome sequencing highlights the dynamic early history of dogs ... |
title_full_unstemmed |
Data from: Genome sequencing highlights the dynamic early history of dogs ... |
title_sort |
data from: genome sequencing highlights the dynamic early history of dogs ... |
publisher |
Dryad |
publishDate |
2016 |
url |
https://dx.doi.org/10.5061/dryad.sk3p7 https://datadryad.org/stash/dataset/doi:10.5061/dryad.sk3p7 |
genre |
Canis lupus |
genre_facet |
Canis lupus |
op_relation |
https://dx.doi.org/10.1371/journal.pgen.1004016 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.sk3p710.1371/journal.pgen.1004016 |
_version_ |
1789964300621709312 |