High genomic diversity in the bank vole at the northern apex of a range expansion: the role of multiple colonizations and end-glacial refugia ...

• Main Authors: Marková, Silvia, Horníková, Michaela, Lanier, Hayley, Henttonen, Heikki, Searle, Jeremy, Weider, Lawrence, Kotlík, Petr
• Format: Dataset
• Language: English
• Published: Dryad 2020
• Subjects: Clethrionomys glareolus; genotyping-by-sequencing; cryptic refugia; Fennoscandia
• Online Access: https://dx.doi.org/10.5061/dryad.sbcc2fr34; https://datadryad.org/stash/dataset/doi:10.5061/dryad.sbcc2fr34

The history of repeated northern glacial cycling and southern climatic stability has long dominated explanations for how genetic diversity is distributed within temperate species in Eurasia and North America. However, growing evidence indicates the importance of cryptic refugia for northern colonization dynamics. An excellent geographic region to assess this is Fennoscandia, where recolonization at the end of the last glaciation was restricted to specific routes and temporal windows. We used genomic data to analyze genetic diversity and colonization history of the bank vole (Myodes glareolus) throughout Europe (> 800 samples) with Fennoscandia as the northern apex. We inferred that bank voles colonized Fennoscandia multiple times by two different routes; with three separate colonizations via a southern land-bridge route deriving from a ‘Carpathian’ glacial refugium and one via a north-eastern route from an ‘Eastern’ glacial refugium near the Ural Mts. Clustering of genome-wide SNPs revealed tremendous ... : Genotype information for 809 individuals (6078 SNP) Input for population genomic analyses (SNP after quality filtering and outlier loci removal). Variant Call Format file SNP.vcf.zip ...