Data from: Does the niche-breadth or trade-off hypothesis explain the abundance-occupancy relationship in avian haemosporidia?

• Main Authors: Drovetski, Sergei V., Aghayan, Sargis A., Mata, Vanessa A., Lopes, Ricardo J., Mode, Nicolle A., Harvey, Johanna A., Voelker, Gary
• Format: Dataset
• Language: English
• Published: Dryad 2014
• Subjects: Anthus spinoletta; Ficedula parva; host specialization; Luscinia luscinia; Periparus ater; Acrocephalus palustris; Alectoris Chukar; Cettia cetti; Sturnus unicolor; Lanius meridionalis; Anthus trivialis; Passer hispaniolensis; Phylloscopus sindianus; Streptopelia turtur; Strix aluco; Upupa epops; Emberiza hortulana; Emberiza melanocephala; Sylvia crassirostris; Saxicola maurus; Passer domesticus; Poecile lugubris; Sylvia borin; Carduelis cannabina; Picus vaillantii; Sylvia curruca; blood parasites; Sylvia deserticola; Hippolais polyglotta; Holocene; Galerida cristata; Certhia brachydactyla; Certhia familiaris; Phoenicurus moussieri; Otus scops; Host Parasite Interactions; Cyanistes caeruleus; Ficedula semitorquata; Motacilla cinerea; Sitta krueperi; Cyanopica cooki; Cyanistes teneriffae; Emberiza calandra; Lanius senator; Serinus serinus; Athene noctua; Lanius collurio; Sylvia hortensis; Sylvia communis; Corvus corone; Hirundo rustica; Eremophila alpestris; Erithacus rubecula; Irania gutturalis; Pyrrhula pyrrhula; Motacilla flava; Prunella ocularis; Turdus viscivorus; Luscinia megarhynchos; Oenanthe deserti; Sylvia atricapilla; Muscicapa striata; Plasmodium; Sylvia cantillans; Oenanthe leucura; Haemosporidia; Turdus philomelos; Phoenicurus phoenicurus; Sitta europaea; Aegithalos caudatus; Troglodytes troglodytes; Petronia petronia; Turdus merula; abundance-occupancy relationship; Rhodopechys sanguineus; Carduelis flavirostris; Falco naumanni; Fringilla coelebs; Phylloscopus sibilatrix; Phoenicurus ochruros; Oenanthe oenanthe; Lophophanes cristatus; Pycnonotus barbatus; Carduelis carduelis; Carpodacus erythrinus; Phylloscopus collybita; Sylvia melanocephala; Monticola saxatilis; Coccothraustes coccothraustes; Cercotrichas galactotes; Prunella modularis; Sylvia nisoria; Falco tinnunculus; Parus major; Haemoproteus; Alectoris rufa; Hippolais languida; Ficedula speculigera; Dendrocopos minor; Dendrocopos major; Emberiza cia; Saxicola rubetra; Sylvia undata; Garrulus glandarius; Leucocytozoon; Columba palumbus; Picus viridis; Phylloscopus nitidus; Iduna opaca; Riparia riparia; Chloris chloris; Emberiza cirlus; Chukar; Parus
• Online Access: https://dx.doi.org/10.5061/dryad.r8bj6; http://datadryad.org/stash/dataset/doi:10.5061/dryad.r8bj6

Two hypotheses have been proposed to explain the abundance-occupancy relationship (AOR) in parasites. The niche-breadth hypothesis suggests that host generalists are more abundant and efficient at colonizing different host communities than specialists. The trade-off hypothesis argues that host specialists achieve high density across their hosts’ ranges, whereas generalists incur the high cost of adaptation to diverse immuno-defense systems. We tested these hypotheses using 386 haemosporidian cytochrome-b lineages (1894 sequences) recovered from 2318 birds of 103 species sampled in NW Africa, NW Iberia, W Greater Caucasus, and Transcaucasia. The number of regions occupied by lineages was associated with their frequency suggesting the presence of AOR in avian Haemosporidia. However, neither hypothesis provided a better explanation for the AOR. Although, the host-generalist Plasmodium SGS1 was over 3 times more abundant than other widespread lineages, both host specialists and generalists were successful in colonizing all study regions and achieved overall high prevalence. : Tested birdsBirds were sampled in the wild in four biogeographic regions (Region): NWA - Northwest Africa, NWI - Northwest Iberia, TRC - Transcaucasia, WGC - Western Greater Caucasus. Bird ID is the unique identifier for each bird sampled. Repeated bird IDs indicate multiple infections in the same bird. Date is when the sample was taken in the field. Parasite lineage is a unique identifier and 'none' indicates that no haemosporidian parasite lineages were found. Please see the original article for details of methods.Haemosporidian lineages FASTAThe data file is a FASTA alignment of unique haemosporidian lineages identified in the bird samples. The name of each lineage corresponds to the parasite lineage identifier used in the manuscript and associated files. Lineages are identified to genus when species identification was not possible.