Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow
Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive vs. neutral genetic markers in differentiating temporally div...
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Online Access: | https://dx.doi.org/10.5061/dryad.r28v2 http://datadryad.org/stash/dataset/doi:10.5061/dryad.r28v2 |
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ftdatacite:10.5061/dryad.r28v2 2023-05-15T15:32:42+02:00 Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow O'Malley, Kathleen G. Jacobson, Dave P. Kurth, Ryon Dill, Allen J. Banks, Michael A. 2013 https://dx.doi.org/10.5061/dryad.r28v2 http://datadryad.org/stash/dataset/doi:10.5061/dryad.r28v2 en eng Dryad https://dx.doi.org/10.1111/eva.12095 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 CC0 Captive Populations Oncorhynchus tshawytscha Life History Evolution Holocene Conservation Biology Ecological Genetics dataset Dataset 2013 ftdatacite https://doi.org/10.5061/dryad.r28v2 https://doi.org/10.1111/eva.12095 2022-02-08T12:53:43Z Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive vs. neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid high gene flow owing to artificial propagation and habitat alteration. We compared seven putative migration timing genes to ten microsatellite loci in delineating three migratory groups of Chinook in the Feather River, CA: offspring of fall run hatchery broodstock that returned as adults to freshwater in fall (fall run), spring run offspring that returned in spring (spring run), and fall run offspring that returned in spring (FRS). We found evidence for significant differentiation between the fall and federally-listed threatened spring groups based on divergence at three circadian clock genes (OtsClock1b, OmyFbxw11 and Omy1009UW), but not neutral markers. We thus demonstrate the importance of genetic marker choice in resolving complex life history types. These findings directly impact conservation management strategies and add to previous evidence from Pacific and Atlantic salmon indicating that circadian clock genes influence migration timing. : DPJ_ FRH09 9Msats and 7 genes (07 19 12)revExcel file containing genotype data for Feather River Chinook salmon. Individuals are identified by population in each row: Fall, Spring and FRS (fall return spring). Loci are designated by column with the nine microsatellite listed followed by seven adaptive markers. Dataset Atlantic salmon DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Captive Populations Oncorhynchus tshawytscha Life History Evolution Holocene Conservation Biology Ecological Genetics |
spellingShingle |
Captive Populations Oncorhynchus tshawytscha Life History Evolution Holocene Conservation Biology Ecological Genetics O'Malley, Kathleen G. Jacobson, Dave P. Kurth, Ryon Dill, Allen J. Banks, Michael A. Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
topic_facet |
Captive Populations Oncorhynchus tshawytscha Life History Evolution Holocene Conservation Biology Ecological Genetics |
description |
Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive vs. neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid high gene flow owing to artificial propagation and habitat alteration. We compared seven putative migration timing genes to ten microsatellite loci in delineating three migratory groups of Chinook in the Feather River, CA: offspring of fall run hatchery broodstock that returned as adults to freshwater in fall (fall run), spring run offspring that returned in spring (spring run), and fall run offspring that returned in spring (FRS). We found evidence for significant differentiation between the fall and federally-listed threatened spring groups based on divergence at three circadian clock genes (OtsClock1b, OmyFbxw11 and Omy1009UW), but not neutral markers. We thus demonstrate the importance of genetic marker choice in resolving complex life history types. These findings directly impact conservation management strategies and add to previous evidence from Pacific and Atlantic salmon indicating that circadian clock genes influence migration timing. : DPJ_ FRH09 9Msats and 7 genes (07 19 12)revExcel file containing genotype data for Feather River Chinook salmon. Individuals are identified by population in each row: Fall, Spring and FRS (fall return spring). Loci are designated by column with the nine microsatellite listed followed by seven adaptive markers. |
format |
Dataset |
author |
O'Malley, Kathleen G. Jacobson, Dave P. Kurth, Ryon Dill, Allen J. Banks, Michael A. |
author_facet |
O'Malley, Kathleen G. Jacobson, Dave P. Kurth, Ryon Dill, Allen J. Banks, Michael A. |
author_sort |
O'Malley, Kathleen G. |
title |
Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
title_short |
Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
title_full |
Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
title_fullStr |
Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
title_full_unstemmed |
Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow |
title_sort |
data from: adaptive genetic markers discriminate migratory runs of chinook salmon (oncorhynchus tshawytscha) amid continued gene flow |
publisher |
Dryad |
publishDate |
2013 |
url |
https://dx.doi.org/10.5061/dryad.r28v2 http://datadryad.org/stash/dataset/doi:10.5061/dryad.r28v2 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_relation |
https://dx.doi.org/10.1111/eva.12095 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_rightsnorm |
CC0 |
op_doi |
https://doi.org/10.5061/dryad.r28v2 https://doi.org/10.1111/eva.12095 |
_version_ |
1766363197515759616 |