Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ...
Domestic dogs exhibit diverse types of both congenital and non-congenital hearing losses. Rhodesian Ridgebacks can suffer from a progressive hearing loss in the early stage of their life, a condition known as early onset of adult deafness (EOAD), where they lose their hearing ability within 1-2 year...
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Online Access: | https://dx.doi.org/10.5061/dryad.pg4f4qrqt https://datadryad.org/stash/dataset/doi:10.5061/dryad.pg4f4qrqt |
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ftdatacite:10.5061/dryad.pg4f4qrqt 2024-06-09T07:45:18+00:00 Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... Kawakami, Takeshi Raghavan, Vandana Ruhe, Alison Jensen, Meghan Milano, Ausra Nelson, Thomas Boyko, Adam 2021 https://dx.doi.org/10.5061/dryad.pg4f4qrqt https://datadryad.org/stash/dataset/doi:10.5061/dryad.pg4f4qrqt en eng Dryad Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Canis lupus familiaris genome-wide association studies GWAS SNP array genotyping hearing loss deafness Dataset dataset 2021 ftdatacite https://doi.org/10.5061/dryad.pg4f4qrqt 2024-05-13T11:13:04Z Domestic dogs exhibit diverse types of both congenital and non-congenital hearing losses. Rhodesian Ridgebacks can suffer from a progressive hearing loss in the early stage of their life, a condition known as early onset of adult deafness (EOAD), where they lose their hearing ability within 1-2 years after birth. In order to investigate the genetic basis of this hereditary hearing disorders, we performed a genome-wide association study (GWAS) by using a sample of 23 affected and 162 control Rhodesian Ridgebacks. We identified a genomic region on canine chromosome 18 (CFA18) that is strongly associated with EOAD, and our subsequent targeted Sanger sequencing analysis identified a 12-bp inframe deletion in EPS8L2 (CFA18:25,868,739-25,868,751 in the UMICH_Zoey_3.1/canFam5 reference genome build). Additional genotyping confirmed a strong association between the 12-bp deletion and EOAD, where all affected dogs were homozygous for the deletion, while none of the control dogs was a deletion homozygote. A ... : In order to recruit EOAD-affected and normal hearing dogs, we conducted an online survey in 2020 to private dog owners of Rhodesian Ridgebacks who agreed to participate in scientific research. DNA was extracted from buccal swab samples collected by dog owners and extracted by Illumina, Inc. Genotypes of the dogs were collected by using custom Illumina Canine high-density SNP arrays. ... Dataset Canis lupus DataCite Metadata Store (German National Library of Science and Technology) |
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Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
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ftdatacite |
language |
English |
topic |
Canis lupus familiaris genome-wide association studies GWAS SNP array genotyping hearing loss deafness |
spellingShingle |
Canis lupus familiaris genome-wide association studies GWAS SNP array genotyping hearing loss deafness Kawakami, Takeshi Raghavan, Vandana Ruhe, Alison Jensen, Meghan Milano, Ausra Nelson, Thomas Boyko, Adam Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
topic_facet |
Canis lupus familiaris genome-wide association studies GWAS SNP array genotyping hearing loss deafness |
description |
Domestic dogs exhibit diverse types of both congenital and non-congenital hearing losses. Rhodesian Ridgebacks can suffer from a progressive hearing loss in the early stage of their life, a condition known as early onset of adult deafness (EOAD), where they lose their hearing ability within 1-2 years after birth. In order to investigate the genetic basis of this hereditary hearing disorders, we performed a genome-wide association study (GWAS) by using a sample of 23 affected and 162 control Rhodesian Ridgebacks. We identified a genomic region on canine chromosome 18 (CFA18) that is strongly associated with EOAD, and our subsequent targeted Sanger sequencing analysis identified a 12-bp inframe deletion in EPS8L2 (CFA18:25,868,739-25,868,751 in the UMICH_Zoey_3.1/canFam5 reference genome build). Additional genotyping confirmed a strong association between the 12-bp deletion and EOAD, where all affected dogs were homozygous for the deletion, while none of the control dogs was a deletion homozygote. A ... : In order to recruit EOAD-affected and normal hearing dogs, we conducted an online survey in 2020 to private dog owners of Rhodesian Ridgebacks who agreed to participate in scientific research. DNA was extracted from buccal swab samples collected by dog owners and extracted by Illumina, Inc. Genotypes of the dogs were collected by using custom Illumina Canine high-density SNP arrays. ... |
format |
Dataset |
author |
Kawakami, Takeshi Raghavan, Vandana Ruhe, Alison Jensen, Meghan Milano, Ausra Nelson, Thomas Boyko, Adam |
author_facet |
Kawakami, Takeshi Raghavan, Vandana Ruhe, Alison Jensen, Meghan Milano, Ausra Nelson, Thomas Boyko, Adam |
author_sort |
Kawakami, Takeshi |
title |
Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
title_short |
Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
title_full |
Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
title_fullStr |
Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
title_full_unstemmed |
Early onset of adult deafness in the Rhodesian Ridgeback is associated with in-frame deletion in the EPS8L2 gene ... |
title_sort |
early onset of adult deafness in the rhodesian ridgeback is associated with in-frame deletion in the eps8l2 gene ... |
publisher |
Dryad |
publishDate |
2021 |
url |
https://dx.doi.org/10.5061/dryad.pg4f4qrqt https://datadryad.org/stash/dataset/doi:10.5061/dryad.pg4f4qrqt |
genre |
Canis lupus |
genre_facet |
Canis lupus |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.pg4f4qrqt |
_version_ |
1801374593366097920 |