Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ...
Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in o...
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ftdatacite:10.5061/dryad.n8f30 2024-02-04T09:58:21+01:00 Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice 2014 https://dx.doi.org/10.5061/dryad.n8f30 https://datadryad.org/stash/dataset/doi:10.5061/dryad.n8f30 en eng Dryad https://dx.doi.org/10.1111/1755-0998.12241 Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 Bioinfomatics Calanus helgolandicus Calanus marshallae Crustaceans Calanus finmarchicus Calanus glacialis Copepoda Calanus hyperboreus Phyloinfomatics Dataset dataset 2014 ftdatacite https://doi.org/10.5061/dryad.n8f3010.1111/1755-0998.12241 2024-01-05T04:51:50Z Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in order to efficiently identify parental species and hybrids. Using Next Generation Sequencing analysis of both the genome and transcriptome from two sibling species, C. finmarchichus and C. glacialis, we developed a panel of 12 nuclear insertion/deletion markers. All the markers showed species specific amplicon length. Furthermore most of the markers were successfully amplified in other Calanus species allowing the molecular identification of C. helgolandicus, C hyperboreus and C. marshallae. ... : C. finmarchicus genome (contigs)Contigs of C. finmarchicus genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cfin_Genome_Contigs.fastaC. glacialis genome (contigs)Contigs of C. glacialis genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cgla_Genome_Contigs.fastaC. finmarchicus transcriptome (contigs)Contigs of C. finmarchicus transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cfin_Transcriptome_Contigs.fastaC. glacialis transcriptome (contigs)Contigs of C. glacialis transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cgla_Transcriptome_Contigs.fastaMicrosatellites_GenotypesTable of microsatellite genotyping for species identification of Calanus finmarchicus and C. ... Dataset Arctic Calanus finmarchicus Calanus glacialis Calanus hyperboreus Zooplankton Copepods DataCite Metadata Store (German National Library of Science and Technology) Arctic |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Bioinfomatics Calanus helgolandicus Calanus marshallae Crustaceans Calanus finmarchicus Calanus glacialis Copepoda Calanus hyperboreus Phyloinfomatics |
spellingShingle |
Bioinfomatics Calanus helgolandicus Calanus marshallae Crustaceans Calanus finmarchicus Calanus glacialis Copepoda Calanus hyperboreus Phyloinfomatics Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
topic_facet |
Bioinfomatics Calanus helgolandicus Calanus marshallae Crustaceans Calanus finmarchicus Calanus glacialis Copepoda Calanus hyperboreus Phyloinfomatics |
description |
Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in order to efficiently identify parental species and hybrids. Using Next Generation Sequencing analysis of both the genome and transcriptome from two sibling species, C. finmarchichus and C. glacialis, we developed a panel of 12 nuclear insertion/deletion markers. All the markers showed species specific amplicon length. Furthermore most of the markers were successfully amplified in other Calanus species allowing the molecular identification of C. helgolandicus, C hyperboreus and C. marshallae. ... : C. finmarchicus genome (contigs)Contigs of C. finmarchicus genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cfin_Genome_Contigs.fastaC. glacialis genome (contigs)Contigs of C. glacialis genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cgla_Genome_Contigs.fastaC. finmarchicus transcriptome (contigs)Contigs of C. finmarchicus transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cfin_Transcriptome_Contigs.fastaC. glacialis transcriptome (contigs)Contigs of C. glacialis transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.Cgla_Transcriptome_Contigs.fastaMicrosatellites_GenotypesTable of microsatellite genotyping for species identification of Calanus finmarchicus and C. ... |
format |
Dataset |
author |
Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice |
author_facet |
Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice |
author_sort |
Smolina, Irina |
title |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
title_short |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
title_full |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
title_fullStr |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
title_full_unstemmed |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification ... |
title_sort |
data from: genome- and transcriptome-assisted development of nuclear insertion/deletion markers for calanus species (copepoda: calanoida) identification ... |
publisher |
Dryad |
publishDate |
2014 |
url |
https://dx.doi.org/10.5061/dryad.n8f30 https://datadryad.org/stash/dataset/doi:10.5061/dryad.n8f30 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Calanus finmarchicus Calanus glacialis Calanus hyperboreus Zooplankton Copepods |
genre_facet |
Arctic Calanus finmarchicus Calanus glacialis Calanus hyperboreus Zooplankton Copepods |
op_relation |
https://dx.doi.org/10.1111/1755-0998.12241 |
op_rights |
Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cc0-1.0 |
op_doi |
https://doi.org/10.5061/dryad.n8f3010.1111/1755-0998.12241 |
_version_ |
1789962797964066816 |