R script: 4_RAD_Parse_blast_xml_Pp_Dd

This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO).

Bibliographic Details
Main Authors: Viricel, Amélia, Pante, Eric, Dabin, Willy, Simon-Bouhet, Benoît
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2013
Subjects:
Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Northeast Atlantic
Delphinus delphis
Phocoena phocoena
Online Access:https://dx.doi.org/10.5061/dryad.mk364/5
http://datadryad.org/resource/doi:10.5061/dryad.mk364/5
id ftdatacite:10.5061/dryad.mk364/5
record_format openpolar
spelling ftdatacite:10.5061/dryad.mk364/5 2023-05-15T17:41:07+02:00 R script: 4_RAD_Parse_blast_xml_Pp_Dd Viricel, Amélia Pante, Eric Dabin, Willy Simon-Bouhet, Benoît 2013 https://dx.doi.org/10.5061/dryad.mk364/5 http://datadryad.org/resource/doi:10.5061/dryad.mk364/5 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.mk364 http://creativecommons.org/publicdomain/zero/1.0 CC0 Phylogenetic Theory and Methods Genomics/Proteomics Mammals Northeast Atlantic Delphinus delphis Phocoena phocoena dataset Dataset DataFile 2013 ftdatacite https://doi.org/10.5061/dryad.mk364/5 https://doi.org/10.5061/dryad.mk364 2021-11-05T12:55:41Z This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO). Dataset Northeast Atlantic Phocoena phocoena DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Northeast Atlantic
Delphinus delphis
Phocoena phocoena
spellingShingle Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Northeast Atlantic
Delphinus delphis
Phocoena phocoena
Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
R script: 4_RAD_Parse_blast_xml_Pp_Dd
topic_facet Phylogenetic Theory and Methods
Genomics/Proteomics
Mammals
Northeast Atlantic
Delphinus delphis
Phocoena phocoena
description This script was used to summarize Blast hits results from Blast2GO (number of hits belonging to each organism) and to retrieve and export in fasta format the whole sequence from the best hits (these longer sequences were subsequently used in Blast2GO).
format Dataset
author Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
author_facet Viricel, Amélia
Pante, Eric
Dabin, Willy
Simon-Bouhet, Benoît
author_sort Viricel, Amélia
title R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_short R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_full R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_fullStr R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_full_unstemmed R script: 4_RAD_Parse_blast_xml_Pp_Dd
title_sort r script: 4_rad_parse_blast_xml_pp_dd
publisher Dryad Digital Repository
publishDate 2013
url https://dx.doi.org/10.5061/dryad.mk364/5
http://datadryad.org/resource/doi:10.5061/dryad.mk364/5
genre Northeast Atlantic
Phocoena phocoena
genre_facet Northeast Atlantic
Phocoena phocoena
op_relation https://dx.doi.org/10.5061/dryad.mk364
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.mk364/5
https://doi.org/10.5061/dryad.mk364
_version_ 1766142392300208128

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