MiSeq raw sequences (Run 1) of the V4 region 16S rRNA gene from the spleens of 355 murinae from Senegal and 21 positive and negative controls (part 2 to 4)

This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each individual in duplicate or triplicate using the MiSeq platform (Run 1). The 823 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 355 multiplexed sa...

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Bibliographic Details
Main Authors: Galan, Maxime, Razzauti, Maria, Bard, Emilie, Bernard, Maria, Brouat, Carine, Charbonnel, Nathalie, Dehne-Garcia, Alexandre, Loiseau, Anne, Tatard, Caroline, Tamisier, Lucie, Vayssier-Taussat, Muriel, Vignes, Hélène, Cosson, Jean-François
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
Zoonoses
Rodents
West Africa
metagenomics
16S rRNA amplicon sequencing
MiSeq
Next-generation sequencing
NGS
High-throughput sequencing
HTS
Metabarcoding
Epidemiology
Disease monitoring
Senegal
Mus musculus domesticus
Rattus rattus
Mastomys natalensis
Mastomys erythroleucus
Borrelia
Bartonella
Mycoplasma
Ehrlichia
Rickettsia
Streptobacillus
Orientia
Online Access:https://dx.doi.org/10.5061/dryad.m3p7d/3
http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/3
Description
Summary:This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each individual in duplicate or triplicate using the MiSeq platform (Run 1). The 823 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 355 multiplexed samples and the 21 positive and negative controls are provided in the following XLSX file titled: Information concerning the samples multiplexed in the MiSeq Run 1 & 2.

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