Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis
This ZIP file contains the FASTA files of the most abundant sequences from the 12 pathogenic OTUs (Bartonella, Borrelia, Ehrlichia, Orientia, Rickettsia, Streptobacillus and Mycoplasma_OTU_1 to Mycoplasma_OTU_6) and reference sequences from Silva ribosomal database v119 for the same genera.
| Main Authors: | , , , , , , , , , , , , |
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| Format: | Dataset |
| Language: | unknown |
| Published: |
Dryad Digital Repository
2016
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.m3p7d/14 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/14 |
| _version_ | 1821691847757529088 |
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| author | Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François |
| author_facet | Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François |
| author_sort | Galan, Maxime |
| collection | DataCite |
| description | This ZIP file contains the FASTA files of the most abundant sequences from the 12 pathogenic OTUs (Bartonella, Borrelia, Ehrlichia, Orientia, Rickettsia, Streptobacillus and Mycoplasma_OTU_1 to Mycoplasma_OTU_6) and reference sequences from Silva ribosomal database v119 for the same genera. |
| format | Dataset |
| genre | Rattus rattus |
| genre_facet | Rattus rattus |
| id | ftdatacite:10.5061/dryad.m3p7d/14 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftdatacite |
| op_doi | https://doi.org/10.5061/dryad.m3p7d/14 https://doi.org/10.5061/dryad.m3p7d |
| op_relation | https://dx.doi.org/10.5061/dryad.m3p7d |
| op_rights | http://creativecommons.org/publicdomain/zero/1.0 |
| op_rightsnorm | CC0 |
| publishDate | 2016 |
| publisher | Dryad Digital Repository |
| record_format | openpolar |
| spelling | ftdatacite:10.5061/dryad.m3p7d/14 2025-01-17T00:26:56+00:00 Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François 2016 https://dx.doi.org/10.5061/dryad.m3p7d/14 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/14 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.m3p7d http://creativecommons.org/publicdomain/zero/1.0 CC0 Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia dataset Dataset DataFile 2016 ftdatacite https://doi.org/10.5061/dryad.m3p7d/14 https://doi.org/10.5061/dryad.m3p7d 2021-11-05T12:55:41Z This ZIP file contains the FASTA files of the most abundant sequences from the 12 pathogenic OTUs (Bartonella, Borrelia, Ehrlichia, Orientia, Rickettsia, Streptobacillus and Mycoplasma_OTU_1 to Mycoplasma_OTU_6) and reference sequences from Silva ribosomal database v119 for the same genera. Dataset Rattus rattus DataCite |
| spellingShingle | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title | Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title_full | Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title_fullStr | Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title_full_unstemmed | Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title_short | Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis |
| title_sort | sequence alignment files of the v4 hypervariable region of the 16s rrna used for the phylogenetic analysis |
| topic | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia |
| topic_facet | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia |
| url | https://dx.doi.org/10.5061/dryad.m3p7d/14 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/14 |