Sequence alignment files of the V4 hypervariable region of the 16S rRNA used for the phylogenetic analysis

This ZIP file contains the FASTA files of the most abundant sequences from the 12 pathogenic OTUs (Bartonella, Borrelia, Ehrlichia, Orientia, Rickettsia, Streptobacillus and Mycoplasma_OTU_1 to Mycoplasma_OTU_6) and reference sequences from Silva ribosomal database v119 for the same genera.

Bibliographic Details
Main Authors: Galan, Maxime, Razzauti, Maria, Bard, Emilie, Bernard, Maria, Brouat, Carine, Charbonnel, Nathalie, Dehne-Garcia, Alexandre, Loiseau, Anne, Tatard, Caroline, Tamisier, Lucie, Vayssier-Taussat, Muriel, Vignes, Hélène, Cosson, Jean-François
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
Zoonoses
Rodents
West Africa
metagenomics
16S rRNA amplicon sequencing
MiSeq
Next-generation sequencing
NGS
High-throughput sequencing
HTS
Metabarcoding
Epidemiology
Disease monitoring
Senegal
Mus musculus domesticus
Rattus rattus
Mastomys natalensis
Mastomys erythroleucus
Borrelia
Bartonella
Mycoplasma
Ehrlichia
Rickettsia
Streptobacillus
Orientia
Online Access:https://dx.doi.org/10.5061/dryad.m3p7d/14
http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/14
Description
Summary:This ZIP file contains the FASTA files of the most abundant sequences from the 12 pathogenic OTUs (Bartonella, Borrelia, Ehrlichia, Orientia, Rickettsia, Streptobacillus and Mycoplasma_OTU_1 to Mycoplasma_OTU_6) and reference sequences from Silva ribosomal database v119 for the same genera.

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