A large wild salmon stock shows genetic and life history differentiation within, but not between, rivers ...

• Main Authors: Miettinen, Antti, Palm, Stefan, Dannewitz, Johan, Lind, Emma, Primmer, Craig R., Romakkaniemi, Atso, Östergren, Johan, Pritchard, Victoria L.
• Format: Dataset
• Language: English
• Published: Dryad 2020
• Subjects: FOS Biological sciences; Kalix; Tornio; Atlantic salmon; Salmo salar
• Online Access: https://dx.doi.org/10.5061/dryad.kh1893245; https://datadryad.org/stash/dataset/doi:10.5061/dryad.kh1893245

Anadromous salmonid fishes frequently exhibit strong geographic population structuring. However, population genetic differentiation of Atlantic salmon (Salmo salar) at fine geographic scales differs across equivalent spatial extents in different regions. So far, fine-scale genetic differentiation has not been assessed in rivers of the Baltic Sea, a region that contains an evolutionarily distinct Atlantic salmon lineage. Thus, Baltic salmon are currently managed on the river level, without focus on potential genetic structure and diversity within rivers. Here, we used microsatellites to characterize the genetic structure of wild juvenile salmon sampled throughout the interconnected, northern Baltic Tornio and Kalix Rivers. We found genetic differentiation within the two rivers, but not between them: salmon in the upper reaches differed from individuals in the lower reaches, regardless of river system. Further, examining smolts migrating from the river to the sea and adults returning from the sea to spawn, we ... : This archive "TornioKalix_Msat_Dryad" contains R code and data files necessary to perform the analyses detailed in the article "A large wild salmon stock shows genetic and life history differentiation within, but not between, rivers" (Miettinen et al. 2020, published in Conservation Genetics). The archive contains the following folders and content: TornioKalix_Msat_Data (Input data) Genotypes (18 microsatellite loci) for Baltic salmon from the Tornio-Kalix River system (1,232 individuals). TornioKalix_Msat_Data (Data for R) Data needed for mixed stock analyses (using R package rubias), and output from those analyses used for statistical tests. Includes individual information about sex, smolt age, sea age and migration date used for statistical analyses. TornioKalix_Msat_R_Codes R files containing commented code used for running statistical analyses. ...